@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA2501: (2016-04-04 )
MDLDTITSISTPMGEGAIGIVRLSGPQAVEIADKLYKGKHLLNDVPSHTINYGHIIDPESKEVVEEVMVSVLRAPKTFTREDIIEINCHGGILTINRVLELTMTYGARMAEPGEFTKRAFLNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKKQRQSILEILAQVEVNIDYPEYDDVEDATTEFLLEQSKEIKQEINRLLDTGAQGKIMREGLSTVIVGKPNVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRETEDIVEKIGVERSRKALSQADLILFVLNNNEALTQEDYTLYEVVKNEDVIVIVNKMDLEQNIDINEVKDMIGDTPLIQTSMLKQEGIDELEIQIRDLFFGGEVQNQDMTYVSNSRHISLLKQARQTIQDAIDAAESGVPMDMVQIDLTRTWEILGEIIGETASDELIDQLFSQFCLGK

Atome Classification :

(31 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GDP_C_19(2GJ9)
MNME_ECOLI
[Raw transfer]



GDP_A_9(2GJA)
MNME_ECOLI
[Raw transfer]



GCP_B_6(3GEI)
MNME_CHLTE
[Raw transfer]



GNP_A_4(3IEV)
ERA_AQUAE
[Raw transfer]



GDP_A_2(3GEH)
MNME_NOSS1
[Raw transfer]



GDP_D_20(2GJ9)

[Raw transfer]



GDP_B_18(2GJ9)
MNME_ECOLI
[Raw transfer]



GDP_A_2(3GEH)
MNME_NOSS1
[Raw transfer]



GDP_A_17(2GJ9)
MNME_ECOLI
[Raw transfer]



GDP_A_20(2GJ8)
MNME_ECOLI
[Raw transfer]



GDP_D_4(2DYK)
?
[Raw transfer]



GDP_A_20(2GJ8)
MNME_ECOLI
[Raw transfer]



GCP_A_4(3GEI)
MNME_CHLTE
[Raw transfer]



GDP_A_2(3GEE)
MNME_CHLTE
[Raw transfer]



GDP_B_10(2GJA)

[Raw transfer]



GDP_A_3(2HJG)
DER_BACSU
[Raw transfer]



GDP_A_2(3GEE)
MNME_CHLTE
[Raw transfer]



GNP_A_5(3R9X)
ERA_AQUAE
[Raw transfer]



GNP_A_4(3R9W)
ERA_AQUAE
[Raw transfer]



GNP_A_4(3IEV)
ERA_AQUAE
[Raw transfer]



GCP_A_2(4DCV)
DER_BACSU
[Raw transfer]



GDP_A_7(1MKY)
DER_THEMA
[Raw transfer]



GDP_C_3(2DYK)
?
[Raw transfer]



GDP_A_2(4DCS)
DER_BACSU
[Raw transfer]



GDP_A_2(4DCU)
DER_BACSU
[Raw transfer]



GDP_A_2(4DCT)
DER_BACSU
[Raw transfer]
37 Fugue 94.5840% -85 - C2 -1XZP - MNME_THEMA -
2 PsiBlast_PDB 93.0740% -90 - C2 -1XZP - MNME_THEMA -
3 PsiBlast_PDB 92.7140% -92 - C2 -1XZQ - ? -
49 HHSearch 92.4639% -82 * C2 *1XZP - MNME_THEMA -
1 PsiBlast_PDB 91.7041% -82 - C2 -3GEH 6.9 MNME_NOSS1
48 HHSearch 91.2841% -77 - C2 -3GEH 6.9 MNME_NOSS1
4 PsiBlast_PDB 88.0537% -88 - C2 -3GEE 6.7 MNME_CHLTE
5 PsiBlast_PDB 87.2737% -94 - C2 -3GEI 6.8 MNME_CHLTE
21 PsiBlast_CBE 86.0737% -94 - C2 -3GEI 6.5 MNME_CHLTE
47 HHSearch 84.2536% -73 - C2 -3GEE 6.7 MNME_CHLTE
52 HHSearch 53.0334% -57 - C2 -3IEV 10.7 ERA_AQUAE
53 HHSearch 51.6330% -73 - C2 -1MKY 7.3 DER_THEMA
24 PsiBlast_CBE 50.1436% -51 - C2 -2GJ9 8.7 MNME_ECOLI
8 PsiBlast_PDB 49.9836% -52 - C2 -2GJA 8.5 MNME_ECOLI
22 PsiBlast_CBE 49.9536% -51 - C2 -2GJA 8.8
25 PsiBlast_CBE 49.7236% -54 - C2 -2GJ9 8.1 MNME_ECOLI
66 HHSearch 49.5037% -45 - C2 -2GJ8 8.8 MNME_ECOLI
23 PsiBlast_CBE 48.9336% -52 - C2 -2GJ9 8.0
9 PsiBlast_PDB 48.8936% -49 - C2 -2GJ8 8.8 MNME_ECOLI
27 PsiBlast_CBE 48.8448% -82 - C2 -1XZQ - ? -
7 PsiBlast_PDB 48.5736% -50 - C2 -2GJ9 8.4 MNME_ECOLI
13 PsiBlast_PDB 44.8838% -45 - C2 -3R9X 9.2 ERA_AQUAE
14 PsiBlast_PDB 44.6138% -48 - C2 -3IEV 9.6 ERA_AQUAE
12 PsiBlast_PDB 44.1638% -44 - C2 -3R9W 9.1 ERA_AQUAE
11 PsiBlast_PDB 43.8539% -55 - C2 -2DYK 6.8 ?
28 PsiBlast_CBE 43.2039% -61 - C2 -2DYK 6.9 ?
16 PsiBlast_PDB 42.9532% -55 - C2 -4DCT 5.5 DER_BACSU
20 PsiBlast_PDB 42.1232% -45 - C2 -2HJG 6.0 DER_BACSU
18 PsiBlast_PDB 42.1232% -46 - C2 -4DCV 6.1 DER_BACSU
15 PsiBlast_PDB 41.9432% -49 - C2 -4DCS 6.5 DER_BACSU
17 PsiBlast_PDB 40.3632% -40 - C2 -4DCU 6.6 DER_BACSU