@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SAP008: (2016-04-04 )
MFNAVVVRKSASNVSYKVEKVDESHLSKGDVLVKVVYSSINYKDMLALQYKGGVIRDYPMIPGIDFAGIVESSSNDKFKEGDNVLVTGYDVGVTHTGGFSEYAQVPGEWIVPIPQEMSIKESMVYGTAGFTAALSIFELEKYGMNIKSQPEILVSGATGGVGSVAIQILHKIGYENITAIVRKEKQIEIAKKLGAKQVIIIEDDNKPLKKGIFDYFLDTVGSNVTLYGLKRLNYQGVATVCGNVAGNSLNANILPFILRGIKLIGIDSVYVDHNIREDIWSKLANEWNIGNSLLYNEIGFEEFYKTIDQLLKGQHLGRTILKV

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NDP_B_6(1O8C)
ACUI_ECOLI
[Raw transfer]




NDP_D_8(1O8C)
ACUI_ECOLI
[Raw transfer]




NDP_A_5(1O8C)
ACUI_ECOLI
[Raw transfer]




NDP_C_7(1O8C)
ACUI_ECOLI
[Raw transfer]




NAP_A_3(3NX4)
?
[Raw transfer]




NAP_A_3(3NX4)
?
[Raw transfer]




EDO_A_3(4JXK)
?
[Raw transfer]




3 PsiBlast_PDB 94.8437%-107 - C1 -3NX4 8.1 ?
21 PsiBlast_CBE 94.6939%-107 - C1 -1O8C 8.2 ACUI_ECOLI
2 PsiBlast_PDB 93.7639%-105 - C1 -1O8C 8.3 ACUI_ECOLI
23 PsiBlast_CBE 93.6739%-108 - C1 -1O8C 7.3 ACUI_ECOLI
41 HHSearch 93.5639%-105 - C1 -3NX4 8.1 ?
22 PsiBlast_CBE 93.3839%-105 - C1 -1O8C 8.7 ACUI_ECOLI
1 PsiBlast_PDB 93.1939%-108 - C1 -1O89 - ACUI_ECOLI -
31 Fugue 92.4140%-105 - C1 -1O89 - ACUI_ECOLI -
6 PsiBlast_PDB 92.1841% -99 - C1 -1Y9E - YHFP_BACSU -
4 PsiBlast_PDB 90.1637%-100 - C1 -4JXK 2.3 ?
24 PsiBlast_CBE 87.3037% -97 - C1 -4JXK - ? -
49 HHSearch 67.5020% -87 - C1 -2EIH - ? -
51 HHSearch 67.2622% -90 - C1 -3S2E - ? -
56 HHSearch 65.6921% -88 - C1 -2FZW - ADHX_HUMAN -
43 HHSearch 64.5719% -80 - C1 -1ZSY - MECR_HUMAN -
45 HHSearch 63.7443% -47 - C1 -1TT7 - YHFP_BACSU -
60 HHSearch 61.7621% -86 - C1 -1F8F - ? -
54 HHSearch 61.4921% -96 - C1 -3TQH - ? -
47 HHSearch 61.4221% -80 - C1 -1JVB - ADH_SULSO -
9 PsiBlast_PDB 61.0224% -87 - C1 -3PII - ADH3_GEOSE -