@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : jhp_0018: (2015-12-11 )
MKKYSAIPTPCYALESERLEKNAKILEIVRQQSGAKVLLALKGYAFWREFGILRQKLNGCCASGLYEAKLAFEEFGGRESHKEICVYSPAFKEAEMSAILPLATSIIFNSFHQYATYKDRILDKNKQLENLGLSPIKMGLRINPLYSEVTPAIYNPCSKMSRLGITPSGFEKGVKEHGLEGVSGLHFHTHCEQNADALCRTLEHVERHFKPYLENMAWVNFGGGHHITRSDYDVNLLIQTIKDFKERYHNTEVILEPGEAIGWQCGFLIASVIDIVQNDQEIAILDASFSAHMPDCLEMPYRPSILKVSVENDEEIIEVEKGENQGAFSYFLGGPTCLAGDFMGSFSFETPLKRGDKIVFQDMLHYTIVKNNSFNGVPLPSLAKIDSQGFKILKSFSYEDYKNRN

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PLP_B_6(3N29)
NSPC_CAMJ8
[Raw transfer]




GOL_A_5(3N29)
NSPC_CAMJ8
[Raw transfer]




GOL_B_7(3N29)
NSPC_CAMJ8
[Raw transfer]




PLP_A_3(3N29)
NSPC_CAMJ8
[Raw transfer]




1 PsiBlast_PDB 98.0046%-116 - C3 -3N29 3.7 NSPC_CAMJ8
21 PsiBlast_CBE 96.5746%-115 - C3 -3N29 3.7 NSPC_CAMJ8
24 HHSearch 95.5849%-109 - C3 -3N29 3.0 NSPC_CAMJ8
30 HHSearch 87.2335%-108 - C3 -3MT1 - ? -
2 PsiBlast_PDB 86.8633%-109 - C3 -3MT1 - ? -
44 Fugue 78.5534%-102 - C3 -3MT1 - ? -
33 HHSearch 64.4719% -84 - C3 -3VAB - ? -
35 HHSearch 64.2318% -82 - C3 -3N2B - DCDA_VIBCH -
25 HHSearch 64.2218% -76 - C3 -1KNW - DCDA_ECOLI -
29 HHSearch 62.8018% -69 - C3 -2J66 - BTRK_BACCI -
6 PsiBlast_PDB 61.6619% -74 - C3 -2YXX - DCDA_THEMA -
22 HHSearch 61.1318% -79 - C3 -2YXX - DCDA_THEMA -
36 HHSearch 61.0418% -88 - C3 -2P3E - DCDA_AQUAE -
37 HHSearch 60.3516% -87 - C3 -2PLJ - ? -
31 HHSearch 59.5417% -81 * C3 *2QGH - DCDA_HELPX -
40 HHSearch 58.9217% -82 - C3 -3NZP - ? -
26 HHSearch 58.0918% -73 - C3 -1TWI - DCDA_METJA -
48 Fugue 55.7215% -80 - C3 -1F3T - DCOR_TRYBB -
27 HHSearch 55.5217% -84 - C3 -2NVA - ? -
23 HHSearch 54.1614% -71 - C3 -2O0T - DCDA_MYCTU -