@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : jhp_0022: (2015-12-11 )
MSVTLINNENNARYEFETIECTRGPKAVDFSKLFETTGFFSYDPGYSSTAGCQSKISYINGKKGELYYRGHRIEDLVAKYKYVDVCRLLLTGELPKNQDESLEFELELRHRSFVHESLLNMFSAFPSNAHPMAKLSSGVSILSTLYSTHQNMHTEEDYQTMARRIVAKIPTLAAICYRNEVGAPIIYPDIARSYVENILFMLRGYPYSRLKHTTQGEVGITPLEVEAFDKILTLHADHGQNASSTTVRNVASTGVHPYAAISAGISALWGHLHGGANEKVLLQLEEIGDVKNVDKYIARVKDKNDNFKLMGFGHRVYKSYDPRAKILKGLKDELHQKGVKMDERLSEIAAKVEEIALKDEYFIERNLYPNVDFYSGTILRALKIPVRFFTPVFVIGRTVGWCAQLLEHVKSPQARITRPRQVYVGD

Atome Classification :

(31 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

AMX_E_5(1CSH)
CISY_CHICK
[Raw transfer]




COA_C_3(1A59)
PRPC_ABDS2
[Raw transfer]




COA_D_4(1AJ8)
CISY_PYRFU
[Raw transfer]




COA_C_3(1AJ8)
CISY_PYRFU
[Raw transfer]




GOL_A_4(1IOM)
?
[Raw transfer]




GOL_A_4(1IOM)
?
[Raw transfer]




GOL_D_4(1VGM)
?
[Raw transfer]




GOL_D_4(1VGM)
?
[Raw transfer]




CIT_E_5(1AJ8)
CISY_PYRFU
[Raw transfer]




CIT_E_5(1AJ8)
CISY_PYRFU
[Raw transfer]




CIT_E_5(1AJ8)
CISY_PYRFU
[Raw transfer]




CIT_F_6(1AJ8)
CISY_PYRFU
[Raw transfer]




FLC_A_3(2P2W)
?
[Raw transfer]




FLC_A_3(2P2W)
?
[Raw transfer]




25 PsiBlast_CBE 96.5645% -98 - C9 -2H12 - CISY_ACEAC -
24 PsiBlast_CBE 96.2545%-101 - C9 -2H12 - CISY_ACEAC -
22 PsiBlast_CBE 96.2045% -99 - C9 -2H12 - CISY_ACEAC -
23 PsiBlast_CBE 95.4745%-101 - C9 -2H12 - CISY_ACEAC -
1 PsiBlast_PDB 95.3545%-102 - C9 -2H12 - CISY_ACEAC -
68 HHSearch 95.2144% -96 - C9 -2H12 - CISY_ACEAC -
21 PsiBlast_CBE 94.8545%-100 - C9 -2H12 - CISY_ACEAC -
33 PsiBlast_CBE 94.1644% -93 - C9 -3MSU - ? -
10 PsiBlast_PDB 93.2243%-100 - C9 -4E6Y - ? -
67 HHSearch 92.3246% -90 - C9 -3MSU - ? -
9 PsiBlast_PDB 92.1244% -92 - C9 -3MSU - ? -
5 PsiBlast_PDB 92.0942% -91 - C9 -4JAF - CISY_ECOLI -
6 PsiBlast_PDB 91.8442% -89 - C9 -4JAG - CISY_ECOLI -
32 PsiBlast_CBE 91.7843% -88 - C9 -1OWB - CISY_ECOLI -
31 PsiBlast_CBE 91.6943% -87 - C9 -1OWC - CISY_ECOLI -
7 PsiBlast_PDB 91.5943% -93 - C9 -1OWB - CISY_ECOLI -
3 PsiBlast_PDB 91.5642% -90 - C9 -4JAD - CISY_ECOLI -
8 PsiBlast_PDB 91.3943% -92 - C9 -1OWC - CISY_ECOLI -
4 PsiBlast_PDB 91.0942% -92 - C9 -4JAE - CISY_ECOLI -
30 PsiBlast_CBE 90.9642% -90 - C9 -4JAD - CISY_ECOLI -
87 Fugue 85.4937% -94 * C9 *1AJ8 3.0 CISY_PYRFU
70 HHSearch 83.9337% -94 - C9 -1AJ8 3.0 CISY_PYRFU
69 HHSearch 83.6936% -91 - C9 -1IOM 3.1 ?
75 HHSearch 83.5435% -93 - C9 -1VGM 2.2 ?
36 PsiBlast_CBE 82.5437% -90 - C9 -1AJ8 7.7 CISY_PYRFU
16 PsiBlast_PDB 82.2036% -88 - C9 -1VGM 2.2 ?
18 PsiBlast_PDB 82.1635% -86 - C9 -1IOM 3.1 ?
13 PsiBlast_PDB 81.9837% -88 - C9 -1AJ8 6.5 CISY_PYRFU
20 PsiBlast_PDB 80.4734%-101 - C9 -2P2W 3.8 ?
78 HHSearch 79.2535% -90 - C9 -2P2W 3.8 ?
81 HHSearch 77.8830% -86 - C9 -1A59 7.3 PRPC_ABDS2