@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : jhp_0023: (2015-12-11 )
MAYNPKILQKPKEGEEITIKDGKLHVPNYPIIPFIEGDGIGSDITPAMIKVVDSAVQKAYKGEKKIAWYEVFVGEKCYQKFKDHKELSPEEQWLLPDTIEAINHYKVSIKGPLTTPIGEGFRSLNVALRQKMDLYVCLRPVRWYGSPSPVKEPQKVDMVIFRENSEDIYAGIEWQEGSAEAKKLIHFLQNELKVEKIRFPESSGVGIKPISKEGTERLVRKAIEYAIDNDKPSVTFVHKGNIMKYTEGAFMKWGYALAQKEFNAQVIDKGPWCSLKNPKTGKEIIIKDMIADAFLQQILLRPSEYSVIATMNLNGDYISDALAAMVGGIGIAPGANLNDTVGMFEATHGTAPKYAGLDKVNPGSIILSAEMMLRHMGWVEAADLIVSAMEKAIKSKKVTYDFARLMDGAKEVKCSEFASVMIENM

Atome Classification :

(37 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ICT_E_5(1PB1)
IDH_ECOLI
[Raw transfer]




ICT_A_3(5ICD)
IDH_ECOLI
[Raw transfer]




ICT_A_3(4AJA)
IDH_ECOLI
[Raw transfer]




ICT_A_3(1GRO)
IDH_ECOLI
[Raw transfer]




ICT_A_3(8ICD)
IDH_ECOLI
[Raw transfer]




ICT_A_4(1CW7)
IDH_ECOLI
[Raw transfer]




ICT_A_3(1GRP)
IDH_ECOLI
[Raw transfer]




ICT_A_2(4BNP)
IDH_ECOLI
[Raw transfer]




ICA_A_3(1AI2)
IDH_ECOLI
[Raw transfer]




AKG_A_3(1BL5)
IDH_ECOLI
[Raw transfer]




ICT_A_4(1CW1)
IDH_ECOLI
[Raw transfer]




ICT_A_4(1P8F)
IDH_ECOLI
[Raw transfer]




CIT_A_3(1HQS)
IDH_BACSU
[Raw transfer]




CIT_A_3(1HQS)
IDH_BACSU
[Raw transfer]




AKG_A_4(1CW4)
IDH_ECOLI
[Raw transfer]




CIT_B_4(1HQS)
IDH_BACSU
[Raw transfer]




IPM_A_4(1HJ6)
IDH_ECOLI
[Raw transfer]




NAP_A_3(4AJR)
IDH_ECOLI
[Raw transfer]




NAP_A_2(1AI2)
IDH_ECOLI
[Raw transfer]




NAP_A_2(4AJ3)
IDH_ECOLI
[Raw transfer]




NAP_A_5(1HJ6)
IDH_ECOLI
[Raw transfer]




NAP_D_4(2D1C)
IDH_THET8
[Raw transfer]




NAP_C_3(2D1C)
IDH_THET8
[Raw transfer]




NAP_C_3(2D1C)
IDH_THET8
[Raw transfer]




NAP_C_3(2D1C)
IDH_THET8
[Raw transfer]




NAP_A_3(2E5M)
?
[Raw transfer]




TAP_A_2(4AJA)
IDH_ECOLI
[Raw transfer]




TAP_A_2(4AJB)
IDH_ECOLI
[Raw transfer]




NAP_B_7(1XKD)
?
[Raw transfer]




NAP_B_4(2E5M)
?
[Raw transfer]




GOL_A_6(3TY4)
LYS12_SCHPO
[Raw transfer]




NAP_A_5(1XKD)
?
[Raw transfer]




NDO_A_2(1AI3)
IDH_ECOLI
[Raw transfer]




A2P_A_2(4AJS)
IDH_ECOLI
[Raw transfer]




NAP_C_3(9ICD)
IDH_ECOLI
[Raw transfer]




A2P_A_2(4AJC)
IDH_ECOLI
[Raw transfer]




AMP_I_9(1ISO)
IDH_ECOLI
[Raw transfer]




TRS_A_2(2Y3Z)
LEU3_THET8
[Raw transfer]




4 PsiBlast_PDB 98.3669%-104 - C7 -1PB1 4.0 IDH_ECOLI
19 PsiBlast_PDB 97.7669%-101 - C7 -1CW4 3.1 IDH_ECOLI
24 PsiBlast_CBE 97.7069%-102 - C7 -4AJC 5.1 IDH_ECOLI
5 PsiBlast_PDB 97.5369%-102 - C7 -1PB3 - IDH_ECOLI -
22 PsiBlast_CBE 97.4169%-101 - C7 -4AJS 5.6 IDH_ECOLI
14 PsiBlast_PDB 97.3569%-103 - C7 -4AJA 6.8 IDH_ECOLI
18 PsiBlast_PDB 97.3069%-102 - C7 -1CW1 4.1 IDH_ECOLI
3 PsiBlast_PDB 97.2869%-103 - C7 -1P8F 3.3 IDH_ECOLI
6 PsiBlast_PDB 97.0169%-101 - C7 -1AI2 6.9 IDH_ECOLI
16 PsiBlast_PDB 97.0069%-102 - C7 -1CW7 3.2 IDH_ECOLI
25 PsiBlast_CBE 96.9769%-101 - C7 -4AJB 6.7 IDH_ECOLI
7 PsiBlast_PDB 96.8769%-101 - C7 -1AI3 6.3 IDH_ECOLI
20 PsiBlast_PDB 96.8569%-104 - C7 -1IDF - IDH_ECOLI -
30 PsiBlast_CBE 96.5368%-100 - C7 -1ISO 3.7 IDH_ECOLI
21 PsiBlast_CBE 96.4969%-100 - C7 -4BNP 4.1 IDH_ECOLI
13 PsiBlast_PDB 96.4469%-100 - C7 -4AJ3 8.9 IDH_ECOLI
60 HHSearch 96.0671%-102 * C7 *3DMS - ? -
9 PsiBlast_PDB 95.9769%-103 - C7 -3ICD - IDH_ECOLI -
23 PsiBlast_CBE 95.9469%-101 - C7 -4AJR 9.3 IDH_ECOLI
10 PsiBlast_PDB 95.6869%-103 - C7 -5ICD 3.5 IDH_ECOLI
27 PsiBlast_CBE 95.5269% -99 - C7 -1HJ6 8.6 IDH_ECOLI
11 PsiBlast_PDB 95.1369%-100 - C7 -9ICD 5.2 IDH_ECOLI
28 PsiBlast_CBE 95.1069%-100 - C7 -1GRP 3.2 IDH_ECOLI
29 PsiBlast_CBE 95.0769% -99 - C7 -1GRO 3.0 IDH_ECOLI
2 PsiBlast_PDB 94.6369% -98 - C7 -1BL5 3.7 IDH_ECOLI
26 PsiBlast_CBE 94.1469% -98 - C7 -8ICD 3.6 IDH_ECOLI
65 HHSearch 91.4966% -95 - C7 -1HQS 3.9 IDH_BACSU
31 PsiBlast_CBE 90.0762% -95 - C7 -1HQS 3.2 IDH_BACSU
32 PsiBlast_CBE 88.6962% -92 - C7 -1HQS 3.9 IDH_BACSU
40 PsiBlast_CBE 80.3349% -92 - C7 -2E5M 7.1 ?
41 PsiBlast_CBE 79.3146% -91 - C7 -1XKD 7.0 ?
39 PsiBlast_CBE 79.2849% -91 - C7 -2E5M 7.1 ?
42 PsiBlast_CBE 77.8246% -93 - C7 -1XKD 7.6 ?
51 Fugue 69.4435% -81 - C7 -2D1C 7.4 IDH_THET8
66 HHSearch 67.8237% -93 - C7 -2D1C 8.5 IDH_THET8
44 PsiBlast_CBE 65.8733% -81 - C7 -2D1C 8.4 IDH_THET8
45 PsiBlast_CBE 64.7733% -82 - C7 -2D1C 8.4 IDH_THET8