@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : jhp_0025: (2015-12-11 )
MLFISATNTNAGKTTCARLLAQYCNACGVKTILLKPIETGVNDAINHSSDAHLFLQDNRLLDRSLTLKDISFYRYHKASAPLIAQQEEDPNAPIDTDNLTQRLHNFTKTYDLVIVEGAGGLCVPITLEENMLDFALKLKAKMLLISHDNLGLINDCLLNDFLLKSYQLDYKIAINLRGNNTAFYSVSLPYIELFNKRSNNPIVIFQQSLKELMSFALK

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_A_2(3QXC)
BIOD_HELPY
[Raw transfer]




ANP_A_3(3QXS)
BIOD_HELPY
[Raw transfer]




GTP_A_2(3QXJ)
BIOD_HELPY
[Raw transfer]




ATP_A_2(3QXC)
BIOD_HELPY
[Raw transfer]




ADP_A_3(3QXH)
BIOD_HELPY
[Raw transfer]




GDP_A_3(3QXX)
BIOD_HELPY
[Raw transfer]




GDP_A_2(3QY0)
BIOD_HELPY
[Raw transfer]




EDO_A_13(3QXJ)
BIOD_HELPY
[Raw transfer]




EDO_A_13(3QY0)
BIOD_HELPY
[Raw transfer]




8AC_A_2(3QXX)
BIOD_HELPY
[Raw transfer]




8AC_A_2(3QXH)
BIOD_HELPY
[Raw transfer]




2 PsiBlast_PDB 99.4396%-135 - C3 -3QXC 7.4 BIOD_HELPY
4 PsiBlast_PDB 98.6696%-135 - C3 -3QXJ 5.2 BIOD_HELPY
25 PsiBlast_CBE 98.6296%-132 - C3 -3MLE - BIOD_HELPY -
3 PsiBlast_PDB 98.1196%-134 - C3 -3QXH 6.6 BIOD_HELPY
7 PsiBlast_PDB 97.8796%-134 - C3 -3QY0 4.0 BIOD_HELPY
22 PsiBlast_CBE 97.8096%-130 - C3 -3MLE - BIOD_HELPY -
6 PsiBlast_PDB 97.7896%-134 - C3 -3QXX 6.3 BIOD_HELPY
5 PsiBlast_PDB 97.7696%-133 - C3 -3QXS 7.7 BIOD_HELPY
24 PsiBlast_CBE 97.7196%-132 - C3 -3MLE - BIOD_HELPY -
21 PsiBlast_CBE 97.5296%-132 - C3 -3MLE - BIOD_HELPY -
8 PsiBlast_PDB 97.0795%-130 - C3 -2QMO - BIOD_HELPY -
23 PsiBlast_CBE 97.0496%-131 - C3 -3MLE - BIOD_HELPY -
1 PsiBlast_PDB 96.6896%-130 - C3 -3MLE - BIOD_HELPY -
31 Fugue 94.1292%-132 - C3 -2QMO - BIOD_HELPY -
42 HHSearch 93.5286%-132 - C3 -3QXC 6.5 BIOD_HELPY
43 HHSearch 58.1324% -99 * C3 *1BYI - BIOD1_ECOLI -
41 HHSearch 57.9125%-102 - C3 -3OF5 - BIOD_FRATT -
14 PsiBlast_PDB 51.4228% -98 - C3 -1BYI - BIOD1_ECOLI -
15 PsiBlast_PDB 50.9828% -98 - C3 -1DAD - BIOD1_ECOLI -
18 PsiBlast_PDB 50.5428% -98 - C3 -1DAG - BIOD1_ECOLI -