@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : jhp_0029: (2015-12-11 )
MDKFNKDLNEVLSHALDLALDFNHVLCTTEHVLLAILEHGIGIRIFNTLEEDGYHKMEQILKDYLQQYIPLKNDPTKIPDRSPVLARVFKKMYASYLDSVGVEELLIFILEYDDCYASKLLDSFGITRSYFKSALLDFDNPNDINDNDINNEEAPKSTPLKKYTKNLSALAQNNALDPVIGREEEILRVIEILGRRKKNNPLLIGEAGVGKTSIAEALALKIAQKEVPEFLQEYEVYSLDLALMVAGAKYRGDFEKRLKKTLKEIQQNGRIILFIDEIHTLLGAGSSNAGSLDAANILKPVLTDGSLKCLGATTFEEYRSVFEKDKAFNRRFSIVNVEEPSKEACYLILKNIAPLYEEHHQVRYNESVFKACVDLTSYYMHDKFLPDKAIELLDEVGSRKKINPKKGKKISVDDVQETLALKLKIPKMRLNSDKKALLRNLEKSLKNKIFAQTEAINLVSNAIKIQHCGLSAKNKPVGSFLFVGPSGVGKTELAKELALNLNLHFERFDMSEYKEAHSVAKLIGSPSGYVGFEQGGLLVNAIKKHPHCLLLLDEIEKAHPNVYDLLLQVMDNATLSDNLGNKASFKHVILIMTSNVGSKDKDTLGFFSTKNAKYDRAVKELLTPELRSRIDAIVPFNALSLEDFERIVSVELDKLKALALEQGVILKFHKEVVKCIAQKSYQTTLGAREIKKIIHNEIKTQLSDILLLQSFKKPCKIACLLEKNQLVLKEIKRAQKVKENDF

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ACP_A_2(4LJA)

[Raw transfer]




ACP_A_2(4LJ9)

[Raw transfer]




ADP_X_6(1R6B)
CLPA_ECOLI
[Raw transfer]




ADP_X_6(1R6B)
CLPA_ECOLI
[Raw transfer]




ADP_A_2(4LJ5)

[Raw transfer]




ADP_A_4(4FCV)
CLPB_THET8
[Raw transfer]




ADP_B_5(4FD2)
CLPB_THET8
[Raw transfer]




ADP_D_6(4FD2)

[Raw transfer]




ADP_A_4(4FD2)
CLPB_THET8
[Raw transfer]




1 PsiBlast_PDB 92.9840%-100 * C4 *1KSF - CLPA_ECOLI -
2 PsiBlast_PDB 92.4840% -99 - C4 -1R6B 7.7 CLPA_ECOLI
122 HHSearch 91.8439%-100 - C4 -1R6B 7.7 CLPA_ECOLI
123 HHSearch 91.5837%-100 - C5 -3PXI - CLPC_BACSU -
111 Fugue 87.5134% -92 - C4 -1QVR - CLPB_THET8 -
7 PsiBlast_PDB 86.0033%-103 - C4 -3PXI - CLPC_BACSU -
14 PsiBlast_PDB 63.9536%-100 - C4 -4LJ7 - CLPB_THET8 -
124 HHSearch 63.2837% -88 - C5 -3PXG - CLPC_BACSU -
24 PsiBlast_CBE 62.9336%-103 - C4 -4LJ7 - CLPB_THET8 -
13 PsiBlast_PDB 62.5436%-101 - C4 -4LJ5 6.9
23 PsiBlast_CBE 62.1036%-103 - C4 -4LJ7 - -
16 PsiBlast_PDB 61.9735% -97 - C4 -4LJA 7.0
8 PsiBlast_PDB 61.7938% -92 - C4 -3PXG - CLPC_BACSU -
15 PsiBlast_PDB 61.6235% -91 - C4 -4LJ9 6.9
25 PsiBlast_CBE 61.5737%-115 - C4 -4FD2 5.6
12 PsiBlast_PDB 61.1036%-103 - C4 -4LJ4 - -
26 PsiBlast_CBE 60.7037%-112 - C4 -4FD2 6.0 CLPB_THET8
20 PsiBlast_PDB 60.6036%-110 - C4 -4FCV 6.7 CLPB_THET8
18 PsiBlast_PDB 60.4337%-112 - C4 -4FD2 6.9 CLPB_THET8
10 PsiBlast_PDB 60.3851%-101 - C4 -4HSE - CLPB_THET8 -