@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : jhp_0037: (2015-12-12 )
MKIKNVLLSGGSGKRLWPLSRSLYPKQFLKLFDHKSLFELSFKRNASLVDETLIVCNEKHYFLALEEIKNEIKNKSVGFLLESLSKNTANAIALSALMSDKEDLLIVTPSDHLIKDFQAYENAIKKAINLAQKGFLVTFGISIEKPNTEFGYIESPNGLDVKRFIEKPSLEKAIEFQKSGGFYFNSGMFVFQAGVFLDELKKHAPTILKGCERAFESLENTHFFEQKIARLSEKSMQDLEDMSIDIALMQQSHKIKMVELNAKWSDLGNFNALFEEAANGTKENVSLNQTPIFAKESTNNLVFSHKVSALLGVEDLAIIDTKDALLVAHKDKAKDLKALVSEIETHNQELLQTHTKVYRPWGSYEVLHESGCYKVKILEVKPNARLSLQKHFHRSEHWVVISGMASVELDHQSFELQANESTYIPKNTLHRLANYGKIPLIIIEVQVGEYVGEDDIVRVDDDFNRQNQNA

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GDD_A_3(2X5Z)
?
[Raw transfer]




GDD_B_5(2X5Z)
?
[Raw transfer]




GTP_A_3(2X60)
?
[Raw transfer]




GTP_B_5(2X60)
?
[Raw transfer]




M1P_A_3(2X65)
?
[Raw transfer]




M1P_A_3(2X65)
?
[Raw transfer]




M1P_A_3(2X65)
?
[Raw transfer]




M1P_B_10(2X65)
?
[Raw transfer]




1 PsiBlast_PDB 94.9695%-110 - C2 -2QH5 - ? -
70 Fugue 93.4593%-109 - C2 -2QH5 - ? -
50 HHSearch 90.9793%-105 - C2 -2QH5 - ? -
49 HHSearch 80.0231% -81 - C2 -2CU2 - ? -
71 Fugue 78.8431% -76 - C2 -2CU2 - ? -
2 PsiBlast_PDB 78.1231% -70 - C2 -2CU2 - ? -
6 PsiBlast_PDB 76.7533% -84 - C2 -2X65 2.8 ?
3 PsiBlast_PDB 76.0933% -79 - C2 -2X5S - ? -
23 PsiBlast_CBE 75.9433% -82 - C2 -2X5Z 7.2 ?
4 PsiBlast_PDB 75.8633% -84 - C2 -2X5Z 7.3 ?
21 PsiBlast_CBE 75.6533% -81 - C2 -2X65 3.9 ?
72 Fugue 75.3832% -83 - C2 -2X65 2.8 ?
5 PsiBlast_PDB 75.1033% -79 - C2 -2X60 7.8 ?
48 HHSearch 74.6231% -78 * C2 *2X65 2.8 ?
22 PsiBlast_CBE 73.4833% -79 - C2 -2X60 7.1 ?
59 HHSearch 55.5319% -80 - C2 -1YP2 - GLGS_SOLTU -
52 HHSearch 49.9917% -69 - C2 -1LVW - ? -
63 HHSearch 47.7520% -78 - C2 -2GGO - ? -
60 HHSearch 47.3319% -72 - C2 -3BRK - GLGC_RHIRD -
54 HHSearch 46.1317% -49 - C2 -3JUK - ? -