@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : jhp_0038: (2015-12-12 )
MKEKIALITGVTGQDGSYLAEYLLNLGYEVHGLKRRSSSINTSRIDHLYEDLHSEHKRRFFLHYGDMTDSSNLIHLIATTKPTEIYNLAAQSHVKVSFETPEYTANADGIGTLRILEAMRILGLEKKTRFYQASTSELYGEVLETPQNENTPFNPRSPYAVAKMYAFYITKNYREAYNLFAVNGILFNHESRVRGETFVTRKITRAASAIAYNLTDCLYLGNLDAKRDWGHAKDYVKMMHLMLQAPTPQDYVIATGKTTSVRDFVKMSFEFIGIDLEFQNTGIKEIGLIKSVDEKRANALQLNLSHLKTGKIVVRIDEHYFRPTEVDLLLGDPTGAEKELGWVREYDLKELVKDMLEYDLKECQKNLYLQDGGYTLRNFYE

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NDP_A_3(1N7H)
GMD2_ARATH
[Raw transfer]




NDP_A_3(1N7H)
GMD2_ARATH
[Raw transfer]




GDP_A_4(1N7H)
GMD2_ARATH
[Raw transfer]




NDP_B_5(1N7H)
GMD2_ARATH
[Raw transfer]




GDP_B_6(1N7H)
GMD2_ARATH
[Raw transfer]




23 PsiBlast_CBE 94.0255% -82 - C1 -1T2A - GMDS_HUMAN -
2 PsiBlast_PDB 93.6855% -83 - C1 -1T2A - GMDS_HUMAN -
21 PsiBlast_CBE 93.2255% -82 - C1 -1T2A - GMDS_HUMAN -
1 PsiBlast_PDB 93.0559% -82 - C1 -1DB3 - GM4D_ECOLI -
22 PsiBlast_CBE 92.0755% -80 - C1 -1T2A - GMDS_HUMAN -
50 HHSearch 91.6756% -87 - C1 -1T2A - GMDS_HUMAN -
48 HHSearch 86.2858% -79 - C1 -1DB3 - GM4D_ECOLI -
25 PsiBlast_CBE 86.0450% -74 - C1 -2Z1M - ? -
4 PsiBlast_PDB 84.9150% -76 - C1 -2Z95 - ? -
3 PsiBlast_PDB 84.8050% -73 - C1 -2Z1M - ? -
6 PsiBlast_PDB 84.0149% -76 - C1 -1N7H 12.1 GMD2_ARATH
26 PsiBlast_CBE 83.9149% -76 - C1 -1N7H 11.9 GMD2_ARATH
28 PsiBlast_CBE 82.9349% -76 - C1 -1N7G - GMD2_ARATH -
43 HHSearch 82.8551% -77 - C1 -2Z1M - ? -
29 PsiBlast_CBE 80.8349% -74 - C1 -1N7G - GMD2_ARATH -
49 HHSearch 80.4854% -67 - C1 -1N7H 12.1 GMD2_ARATH
5 PsiBlast_PDB 79.9449% -77 - C1 -1N7G - GMD2_ARATH -
24 PsiBlast_CBE 78.9850% -69 - C1 -2Z95 - ? -
27 PsiBlast_CBE 76.9049% -77 - C1 -1N7G - GMD2_ARATH -
33 Fugue 76.6954% -74 - C1 -1DB3 - GM4D_ECOLI -