@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : jhp_0081: (2015-12-12 )
MKKKANEEKAPKRAKQEAKTEATQENKAKESNKENKNNKAKEGKIKEAKTKESKVKETAKEPIPVKKLSFNEALEELFANSLSDCVSYESIIQISAKVPTLAQIKKIKELCQKYQKKLVSSSEYAKKLNAIDKIKNTEEKQKVLDEELEDGYDFLKEKDFLEWSRSDSPVRMYLREMGDIKLLSKDEEIELSKQIRLGEDIILDAICSVPYLIDFIYAYKDALINRERRVKELFRSFDDDDENSVSDPKKDDDSEEDEENEERKKVVSEKDKKRVEKVQESFKALDKAKKEWLKALEAPIDEKEDELVRSLTLAYKRQTLKDRLYDLEPTSKLINELVKTMETTLKSGDGFEKELKRLEYKLPLFNDTLIANHKKILANITNMTKEDIIAQVPEATMVSVYMDLKKLFLTKEASEEGFDLAPNKLKEILEQIKRGKLISDRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYATWWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEVVAEEVGLSLDKVKNVIKVTKEPISLETPVGNDDDGKFGDFVEDKNIVSSIDHIMREDLKAQIESVLDQLNEREKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLRSPQYGRILRNYLRI

Atome Classification :

(37 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NACID_H_8(4OIO)
?
[Raw transfer]

-

NACID_H_8(4OIN)
?
[Raw transfer]

-

NACID_H_13(4G7Z)
?
[Raw transfer]

-

NACID_H_8(4Q5S)
?
[Raw transfer]

-

NACID_H_8(4G7H)
?
[Raw transfer]

-

NACID_H_8(4G7O)
?
[Raw transfer]

-

NACID_H_8(4OIP)
?
[Raw transfer]

-

CHAIN_H_8(4Q4Z)
?
[Raw transfer]

-

NACID_H_8(4OIQ)
?
[Raw transfer]

-

NACID_H_8(4OIR)
?
[Raw transfer]

-

NACID_B_2(3UGP)
SIGA_THEAQ
[Raw transfer]

-

NACID_B_2(3UGO)
SIGA_THEAQ
[Raw transfer]

-

NACID_D_1(4KI2)
SIGA_THEAQ
[Raw transfer]

-

NACID_R_15(4G7Z)
?
[Raw transfer]

-

NACID_R_16(4G7H)
?
[Raw transfer]

-

NACID_R_17(4G7O)
?
[Raw transfer]

-

NACID_E_2(4KI2)
SIGA_THEAQ
[Raw transfer]

-

83 Fugue 88.7937% -40 * C6 *4LLG - RPOD_ECOLI -
8 PsiBlast_PDB 82.6954% -72 - C5 -4LLG - RPOD_ECOLI -
7 PsiBlast_PDB 81.2554% -71 - C5 -4LK1 - RPOD_ECOLI -
15 PsiBlast_PDB 81.2254% -70 - C5 -4ZH2 - ? -
18 PsiBlast_PDB 81.1054% -76 - C5 -4LJZ - RPOD_ECOLI -
16 PsiBlast_PDB 81.0754% -68 - C5 -4ZH3 - ? -
17 PsiBlast_PDB 81.0054% -69 - C5 -4ZH4 - ? -
11 PsiBlast_PDB 80.3554% -70 - C5 -4YFK - RPOD_ECOLI -
26 PsiBlast_CBE 80.2154% -80 - C5 -4JKR - RPOD_ECOLI -
12 PsiBlast_PDB 80.1054% -77 - C5 -4YFN - RPOD_ECOLI -
20 PsiBlast_PDB 80.0454% -71 - C5 -4XSX - ? -
14 PsiBlast_PDB 80.0454% -70 - C5 -4YG2 - RPOA_ECOLI (first) -
19 PsiBlast_PDB 79.7854% -70 - C5 -4LK0 - RPOD_ECOLI -
21 PsiBlast_CBE 77.9554% -70 - C5 -4KN4 - RPOD_ECOLI -
9 PsiBlast_PDB 77.4454% -55 - C5 -4MEX - RPOD_ECOLI -
22 PsiBlast_CBE 77.2754% -68 - C5 -4KMU - RPOD_ECOLI -
10 PsiBlast_PDB 77.2354% -54 - C5 -4MEY - RPOD_ECOLI -
13 PsiBlast_PDB 77.1054% -65 - C5 -4YFX - RPOD_ECOLI -
24 PsiBlast_CBE 76.8354% -72 - C5 -4YLP - RPOD_ECOLI -
25 PsiBlast_CBE 76.4454% -70 - C5 -4YLP - RPOD_ECOLI -
46 PsiBlast_CBE 73.6749% -66 - C5 -4G7H 11.9 ?
43 PsiBlast_CBE 73.3549% -66 - C5 -4G7O 11.8 ?
28 PsiBlast_CBE 73.0749% -67 - C5 -4Q4Z 10.2 ?
37 PsiBlast_CBE 73.0649% -64 - C5 -4OIQ 11.2 ?
36 PsiBlast_CBE 73.0149% -65 - C5 -4OIR 10.5 ?
44 PsiBlast_CBE 72.8049% -66 - C5 -4G7O 11.2 ?
40 PsiBlast_CBE 72.6349% -68 - C5 -4OIN 10.6 ?
41 PsiBlast_CBE 72.4349% -65 - C5 -4G7Z 12.0 ?
45 PsiBlast_CBE 72.2749% -64 - C5 -4G7H 11.7 ?
42 PsiBlast_CBE 72.0949% -63 - C5 -4G7Z 11.8 ?
38 PsiBlast_CBE 71.7049% -64 - C5 -4OIP 11.9 ?
39 PsiBlast_CBE 71.6749% -68 - C5 -4OIO 11.8 ?
27 PsiBlast_CBE 70.3049% -62 - C5 -4Q5S 12.4 ?
49 PsiBlast_CBE 55.6654% -61 - C5 -4KI2 12.3 SIGA_THEAQ
52 PsiBlast_CBE 48.5654% -29 - C5 -3UGO 14.7 SIGA_THEAQ
51 PsiBlast_CBE 48.4554% -23 - C5 -3UGP 14.3 SIGA_THEAQ
50 PsiBlast_CBE 47.6454% -31 - C5 -4KI2 10.0 SIGA_THEAQ