@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : jhp_0095: (2015-12-12 )
MFASVFASLGTRIMFVVLAALLGLGGLFIGFVKVMQKDVLVQLMEHLETGQYKKREKTLAYMTKLLEQGIHKYYKNSDNATARKMALDYFKRINDDKGMIYMVVVDKNGVVLFDPVNPKTVGQSGLSLQSVDGVYYVRGYLEAAKKGGGYTYYKMPKYDGGVPEKKFAYSHYDEVSQMVIAATSYYTDINTENQAIKEGVNKVFNENTTKLFLWILTATIALVVLTLIYAKLRIVKRIDELVLKINAFSRGDKDLRAKIDVGDRNDEISQVGRGINLFVENARLIMEEIKGISTLNKTSMDKLVQITQETQKSMKNSSTTLNSVKNKATDIASMMNASIEQSQGLRKRLIETQGLVKESKDAIGDLFSQITESAHTEEELSSKVEQLSRNADDVKSILDIINDIADQTNLLALNAAIEAARAGEHGRGFAVVADEVRNLAGRTQKSLAEINSTIMVIVQEINDVSSQMNLNSQKMERLSDMSKSVQETYEKMSSNLSSVVLDSNQSMDDYAKSGHQIEAMVSDFAEVEKVASKTLADSSDILNITTHVSGTTMNLDKQVNLFKT

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

URE_A_3(3UB6)
?
[Raw transfer]



URE_B_11(3UB6)
?
[Raw transfer]



URE_A_3(3UB6)
?
[Raw transfer]



NHY_A_3(3UB9)
?
[Raw transfer]



NHY_B_8(3UB9)
?
[Raw transfer]



ARF_B_10(3UB8)
?
[Raw transfer]



ACM_B_4(3UB7)
?
[Raw transfer]



ACM_A_3(3UB7)
?
[Raw transfer]



ARF_A_5(3UB8)
?
[Raw transfer]
21 PsiBlast_CBE 94.5094% -77 - C2 -3UB9 3.0 ?
23 PsiBlast_CBE 93.6994% -73 - C2 -3UB7 2.9 ?
24 PsiBlast_CBE 93.0194% -73 - C2 -3UB6 4.0 ?
1 PsiBlast_PDB 92.9094% -69 - C2 -3UB6 4.0 ?
4 PsiBlast_PDB 92.6794% -69 - C2 -3UB9 4.2 ?
22 PsiBlast_CBE 92.4094% -70 - C2 -3UB8 2.6 ?
2 PsiBlast_PDB 92.2694% -69 - C2 -3UB7 3.0 ?
3 PsiBlast_PDB 92.1494% -68 - C2 -3UB8 2.5 ?
32 HHSearch 75.7397% -61 - C2 -3UB6 4.0 ?
49 Fugue 65.4220% -9 - C2 -2CH7 - MCP2_THEMA -
5 PsiBlast_PDB 63.1630% -13 - C2 -2CH7 - MCP2_THEMA -
29 HHSearch 61.9125% -4 - C2 -2CH7 - MCP2_THEMA -
51 Fugue 58.5822% -13 - C2 -1QU7 - MCP1_ECOLI -
28 HHSearch 57.4026% 2 - C2 -3G67 - ? -
33 HHSearch 56.7822% -49 - C2 -2QHK - ? -
54 Fugue 56.3518% 5 - C2 -1AEP - APL3_LOCMI -
26 PsiBlast_CBE 55.5734% 4 - C2 -3ZX6 - -
6 PsiBlast_PDB 54.5234% 1 - C2 -3ZX6 - MCP1_ECOLI -
15 PsiBlast_PDB 54.2023% -45 - C2 -4K08 - ? -
8 PsiBlast_PDB 53.8536% 10 - C2 -3G6B - ? -