@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : jhp_0162: (2015-12-13 )
MLVKGNEILLKAHKEGYGVGAFNFVNFEMLNAIFEAGNEENSPLFIQASEGAIKYMGIDMAVGMVKIMCERYPHIPVALHLDHGTTFESCEKAVKAGFTSVMIDASHHAFEENLELTSKVVKMAHNAGVSVEAELGRLMGIEDNISVDEKDAVLVNPKEAERFVKESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLTNIPLVLHGASAIPDDVRKSYLDAGGDLKGSKGVPFEFLQESIKGGINKVNTDTDLRIAFIAEVRKVANEDKSQFDLRKFFSPAQLALKNVVKERMKLLGSANKI

Atome Classification :

(25 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PH4_A_5(3C56)
ALF_HELPY
[Raw transfer]




TD4_B_10(3N9S)
?
[Raw transfer]




PH4_B_6(3C56)
ALF_HELPY
[Raw transfer]




PGH_A_9(3C52)
ALF_HELPY
[Raw transfer]




PGH_B_6(2ISV)
?
[Raw transfer]




13P_A_5(2FJK)
ALF_THECA
[Raw transfer]




PGH_A_4(2ISW)
?
[Raw transfer]




PGH_A_4(2ISW)
?
[Raw transfer]




PGH_A_5(2ISV)
?
[Raw transfer]




PGH_A_3(1GVF)
KBAY_ECOLI
[Raw transfer]




PGH_A_3(1GVF)
KBAY_ECOLI
[Raw transfer]




PGH_B_12(1GVF)
KBAY_ECOLI
[Raw transfer]




PGH_A_3(1GVF)
KBAY_ECOLI
[Raw transfer]




FLC_B_6(4TO8)
?
[Raw transfer]




FLC_A_4(4TO8)
?
[Raw transfer]




22 PsiBlast_CBE 99.3399% -98 - C5 -3N9R - ? -
4 PsiBlast_PDB 99.3099% -99 - C5 -3N9R - ? -
26 PsiBlast_CBE 99.0299% -98 - C5 -3N9R - ? -
24 PsiBlast_CBE 98.9699%-100 - C5 -3N9R - ? -
23 PsiBlast_CBE 98.6599% -97 - C5 -3N9R - ? -
1 PsiBlast_PDB 98.5999%-100 - C5 -3C4U - ALF_HELPY -
3 PsiBlast_PDB 98.4799% -94 - C5 -3C56 5.0 ALF_HELPY
2 PsiBlast_PDB 98.4299% -96 - C5 -3C52 4.0 ALF_HELPY
28 PsiBlast_CBE 98.3599% -99 - C5 -3C4U - ALF_HELPY -
25 PsiBlast_CBE 98.1499% -96 - C5 -3N9R - ? -
21 PsiBlast_CBE 98.1399% -94 - C5 -3N9S 5.9 ?
27 PsiBlast_CBE 98.0799% -95 - C5 -3C56 5.5 ALF_HELPY
7 PsiBlast_PDB 79.2850% -77 - C5 -2FJK 4.5 ALF_THECA
10 PsiBlast_PDB 79.1142% -93 - C5 -2ISW 4.2 ?
9 PsiBlast_PDB 79.0042% -95 - C5 -2ISV 3.6 ?
50 HHSearch 78.8542% -89 - C5 -2ISW 4.2 ?
49 HHSearch 78.8451% -79 - C5 -1RVG - ? -
13 PsiBlast_PDB 78.0838% -97 - C5 -1GVF 3.6 KBAY_ECOLI
8 PsiBlast_PDB 77.8942% -95 - C5 -3GAK - ? -
36 PsiBlast_CBE 77.5342% -90 - C5 -2ISV 4.6 ?
38 PsiBlast_CBE 77.5238% -96 - C5 -1GVF 3.9 KBAY_ECOLI
51 HHSearch 77.1041% -93 * C5 *1GVF 3.6 KBAY_ECOLI
41 Fugue 75.7142% -91 - C5 -1GVF 3.6 KBAY_ECOLI
11 PsiBlast_PDB 74.3744% -83 - C5 -4TO8 3.5 ?
37 PsiBlast_CBE 74.1544% -82 - C5 -4TO8 3.5 ?