@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : jhp_0171: (2015-12-13 )
MAYFLEQTDSEIFEFIVEEFKRQNEHLEMIASENYTFPSVMEAMGSILTNKYAEGYPNKRYYGGCEVVDKIESLAIERAKKLFNCQFANVQAHSGSQANNAVYHALLKLYDKILGMDLSCGGHLTHGAKVSLTGKHYQSFSYGVGLDGYIDYEEALKIAQSVKPQIIVCGFSAYPREIDFKKFREIADAVGALLLGDIAHVAGLVVANEHAHPFPHCHVVSSTTHKTLRGPRGGLILTNDEEIAAKIDKAIFPGTQGGPLMHVIAAKAVGFKENLKPEFKAYAKLVKSNMQVLAKTLKEKNHKLVSGGTSNHLLLMDFLDKPYSGKDADIALGNAGITVNKNTIPGETRNPFVTSGIRIGSAALSARGMGAKEFEIIGNKISDILNDINNVSLQLHVKEELKTMANQFPVYHQPIF

Atome Classification :

(72 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

2BO_A_3(4WXG)
GLYA_STRT1
[Raw transfer]




PLG_C_6(4WXF)
GLYA_STRT1
[Raw transfer]




PLG_A_3(4WXF)
GLYA_STRT1
[Raw transfer]




2BO_C_6(4WXG)
GLYA_STRT1
[Raw transfer]




ALO_A_3(2W7G)
?
[Raw transfer]




FON_H_8(1KL2)
?
[Raw transfer]




SER_A_2(2VIA)
?
[Raw transfer]




GLY_A_2(2W7H)
?
[Raw transfer]




GLY_A_2(2W7M)
?
[Raw transfer]




ALO_A_3(2VMX)
?
[Raw transfer]




PLP_C_3(1YJS)
?
[Raw transfer]




PLP_A_3(2W7K)
?
[Raw transfer]




PLP_A_3(2W7M)
?
[Raw transfer]




PLP_A_3(2VGV)
?
[Raw transfer]




PLP_A_3(2VMT)
?
[Raw transfer]




PLP_A_2(2W7G)
?
[Raw transfer]




PLP_A_3(2VIB)
?
[Raw transfer]




PLP_A_2(2W7L)
?
[Raw transfer]




PLP_A_3(2VGU)
?
[Raw transfer]




PLP_A_3(2W7H)
?
[Raw transfer]




PLP_A_3(2W7E)
?
[Raw transfer]




PLP_A_3(2VMO)
?
[Raw transfer]




PLP_A_6(1RV3)
GLYC_RABIT
[Raw transfer]




PLP_A_2(2VMX)
?
[Raw transfer]




PLP_A_3(2W7F)
?
[Raw transfer]




PLP_A_3(2W7J)
?
[Raw transfer]




PLP_A_3(2VMP)
?
[Raw transfer]




PLP_A_3(2VGT)
?
[Raw transfer]




PLP_A_3(2VMQ)
?
[Raw transfer]




PLP_C_3(1KL1)
?
[Raw transfer]




PLP_C_3(1YJZ)
?
[Raw transfer]




PLP_A_3(2VMW)
?
[Raw transfer]




PLP_C_3(1KKP)
?
[Raw transfer]




PLP_A_3(2VI9)
?
[Raw transfer]




PLP_A_2(2W7I)
?
[Raw transfer]




PLP_A_3(1KKJ)
?
[Raw transfer]




PLP_A_3(2VGW)
?
[Raw transfer]




PLP_A_5(2DKJ)
GLYA_THET8
[Raw transfer]




PLP_A_2(2W7D)
?
[Raw transfer]




PLP_A_3(2VMZ)
?
[Raw transfer]




PLP_A_2(2VMR)
?
[Raw transfer]




PLP_B_6(2DKJ)
GLYA_THET8
[Raw transfer]




PLP_A_3(2VMS)
?
[Raw transfer]




PLP_A_2(2VI8)
?
[Raw transfer]




PLP_A_3(2VMU)
?
[Raw transfer]




PLP_A_2(2VI8)
?
[Raw transfer]




PLP_A_2(2VMV)
?
[Raw transfer]




PLP_A_5(2DKJ)
GLYA_THET8
[Raw transfer]




PLP_A_2(2VMN)
?
[Raw transfer]




PLP_A_2(2VGS)
?
[Raw transfer]




FFO_B_8(2VMY)
?
[Raw transfer]




FON_G_7(1KL2)
?
[Raw transfer]




PLP_C_3(1YJY)
?
[Raw transfer]




PLP_A_2(1BJ4)
GLYC_HUMAN
[Raw transfer]




FFO_A_6(2VMY)
?
[Raw transfer]




PLP_A_2(3G8M)
GLYA_ECOLI
[Raw transfer]




112 HHSearch 97.1868% -96 - C1 -3N0L - GLYA_CAMJE -
1 PsiBlast_PDB 96.4966% -96 - C1 -3N0L - GLYA_CAMJE -
82 PsiBlast_CBE 86.0552% -85 - C1 -3PGY - GLYA_STAAC -
70 PsiBlast_CBE 85.5752% -84 - C1 -4OT8 - ? -
65 PsiBlast_CBE 85.0952% -84 - C1 -4OTL - ? -
59 PsiBlast_CBE 84.8352% -84 - C1 -4N0W - ? -
24 PsiBlast_CBE 84.7654% -94 - C1 -4P3M - GLYA_PSYIN -
63 PsiBlast_CBE 84.5452% -84 * C1 *4OTL - ? -
68 PsiBlast_CBE 84.4352% -83 - C1 -4OT8 - ? -
79 PsiBlast_CBE 84.0752% -86 - C1 -3PGY - GLYA_STAAC -
80 PsiBlast_CBE 84.0352% -87 - C1 -3PGY - GLYA_STAAC -
118 HHSearch 83.9953% -93 - C1 -3ECD - GLYA2_BURP1 -
67 PsiBlast_CBE 83.9952% -84 - C1 -4OT8 - ? -
2 PsiBlast_PDB 83.9555% -81 - C1 -4J5U - GLYA_RICRS -
61 PsiBlast_CBE 83.9052% -83 - C1 -4N0W - ? -
62 PsiBlast_CBE 83.8052% -85 - C1 -4N0W - ? -
66 PsiBlast_CBE 83.7152% -85 - C1 -4OTL - ? -
60 PsiBlast_CBE 83.3352% -84 - C1 -4N0W - ? -
81 PsiBlast_CBE 83.2552% -86 - C1 -3PGY - GLYA_STAAC -
69 PsiBlast_CBE 83.2552% -83 - C1 -4OT8 - ? -
114 HHSearch 82.5855% -80 - C1 -2DKJ 3.2 GLYA_THET8
71 PsiBlast_CBE 81.4552% -83 - C1 -4WXG 6.5 GLYA_STRT1
73 PsiBlast_CBE 81.3752% -84 - C1 -4WXF 5.5 GLYA_STRT1
12 PsiBlast_PDB 80.7555% -83 - C1 -2VIA 3.0 ?
11 PsiBlast_PDB 80.7155% -84 - C1 -2VIB 3.9 ?
19 PsiBlast_PDB 80.6955% -84 - C1 -2W7D 4.5 ?
3 PsiBlast_PDB 80.4255% -79 - C1 -2DKJ 3.2 GLYA_THET8
30 PsiBlast_CBE 80.3755% -84 - C1 -1YJY 4.2 ?
72 PsiBlast_CBE 79.9952% -82 - C1 -4WXG 6.1 GLYA_STRT1
26 PsiBlast_CBE 79.8755% -83 - C1 -2W7H 2.9 ?
10 PsiBlast_PDB 79.8655% -85 - C1 -2VI8 4.4 ?
6 PsiBlast_PDB 79.8556% -81 - C1 -1KKP 4.5 ?
7 PsiBlast_PDB 79.8356% -83 - C1 -1KL1 4.5 ?
18 PsiBlast_PDB 79.8055% -83 - C1 -2VGU 4.3 ?
15 PsiBlast_PDB 79.8055% -83 - C1 -2VGT 4.0 ?
34 PsiBlast_CBE 79.7955% -82 - C1 -2VMN 4.5 ?
54 PsiBlast_CBE 79.7853% -80 - C1 -3G8M 4.3 GLYA_ECOLI
47 PsiBlast_CBE 79.7555% -83 - C1 -2VMR 4.4 ?
42 PsiBlast_CBE 79.7255% -82 - C1 -2W7J 4.3 ?
31 PsiBlast_CBE 79.7055% -81 - C1 -2VMQ 4.3 ?
21 PsiBlast_CBE 79.7055% -80 - C1 -2DKJ 3.1 GLYA_THET8
45 PsiBlast_CBE 79.6855% -82 - C1 -2VMT 4.5 ?
29 PsiBlast_CBE 79.6755% -84 - C1 -1YJZ 3.8 ?
33 PsiBlast_CBE 79.5455% -82 - C1 -2VMO 3.7 ?
32 PsiBlast_CBE 79.5455% -82 - C1 -2VMP 4.3 ?
28 PsiBlast_CBE 79.5155% -81 - C1 -2W7F 3.3 ?
39 PsiBlast_CBE 79.4155% -83 - C1 -2W7M 4.2 ?
14 PsiBlast_PDB 79.4155% -83 - C1 -2VGS 4.3 ?
13 PsiBlast_PDB 79.4055% -82 - C1 -2VI9 3.9 ?
48 PsiBlast_CBE 79.1755% -83 - C1 -2VMZ 3.1 ?
51 PsiBlast_CBE 79.1155% -82 - C1 -2VMX 4.1 ?
20 PsiBlast_PDB 79.1055% -82 - C1 -2W7E 4.3 ?
53 PsiBlast_CBE 79.0955% -83 - C1 -2VMV 4.3 ?
52 PsiBlast_CBE 78.9855% -81 - C1 -2VMW 4.4 ?
17 PsiBlast_PDB 78.9055% -81 - C1 -2VGW 4.1 ?
74 PsiBlast_CBE 78.8852% -84 - C1 -4WXF 5.8 GLYA_STRT1
16 PsiBlast_PDB 78.7755% -83 - C1 -2VGV 4.3 ?
5 PsiBlast_PDB 78.7556% -83 - C1 -1KKJ 3.2 ?
49 PsiBlast_CBE 78.7455% -82 - C1 -2VMY 4.0 ?
27 PsiBlast_CBE 78.6955% -83 - C1 -2W7G 3.4 ?
8 PsiBlast_PDB 78.6756% -82 - C1 -1KL2 3.9 ?
46 PsiBlast_CBE 78.6255% -82 - C1 -2VMS 3.1 ?
9 PsiBlast_PDB 78.5655% -82 - C1 -1YJS 4.4 ?
43 PsiBlast_CBE 78.1655% -82 - C1 -2W7I 3.0 ?
44 PsiBlast_CBE 77.8455% -81 - C1 -2VMU 4.1 ?
25 PsiBlast_CBE 77.8456% -81 - C1 -1KL2 5.1 ?
41 PsiBlast_CBE 77.6255% -82 - C1 -2W7K 4.1 ?
50 PsiBlast_CBE 77.5955% -81 - C1 -2VMY 4.0 ?
117 HHSearch 77.0754% -79 - C1 -2VI8 4.4 ?
40 PsiBlast_CBE 77.0755% -82 - C1 -2W7L 4.4 ?
111 HHSearch 75.5942% -76 - C1 -1RV3 2.8 GLYC_RABIT
102 Fugue 72.0341% -79 - C1 -1BJ4 2.7 GLYC_HUMAN