@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : jhp_0222: (2015-12-13 )
MEKLVIGSRGSELALWQANHIKERLKKECSMESEIRIVKTTGDKILDAPLNKIGGKGLFTKELEELLLKGAIDLAVHSLKDVPVVFEKGLDLACITKRADVRDTFLSVKFPDLMSLPKGAKVGTTSLRRSMQIKFKRKDLDTESLRGNVQTRLKKLECGEFDAIILAEAGLCRLNVQGAKYRKAFSVKEMIPSMGQGALGVEMLKNHKHFITLQKLNNEESAFCCHLEREFIKGLNGGCQIPIGVHANLMGDEVKIRAVLGLPNGKEVIAKEKQGDKTKAFDLVQELLEEFLQSGAKEILEKAQLF

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

DPM_A_2(4MLV)
?
[Raw transfer]



DPM_B_2(1YPN)
HEM3_ECOLI
[Raw transfer]



DPM_A_2(1GTK)
HEM3_ECOLI
[Raw transfer]



DPM_A_2(4MLQ)
?
[Raw transfer]



DPM_A_2(2YPN)
HEM3_ECOLI
[Raw transfer]



DPM_A_2(1AH5)
HEM3_ECOLI
[Raw transfer]



DPM_A_2(1GTK)
HEM3_ECOLI
[Raw transfer]



18W_A_2(4HTG)
HEM3_ARATH
[Raw transfer]



DPM_A_3(3ECR)
HEM3_HUMAN
[Raw transfer]



DPM_B_2(1PDA)
HEM3_ECOLI
[Raw transfer]



ACY_C_3(1PDA)
?
[Raw transfer]



DPM_B_2(1PDA)
?
[Raw transfer]



ACY_C_3(1PDA)
HEM3_ECOLI
[Raw transfer]
31 HHSearch 88.4046% -76 * C4 *1GTK 8.8 HEM3_ECOLI
32 HHSearch 87.4138% -82 - C4 -3ECR 7.7 HEM3_HUMAN
5 PsiBlast_PDB 86.6746% -72 - C4 -1AH5 8.2 HEM3_ECOLI
1 PsiBlast_PDB 86.2546% -75 - C4 -2YPN 8.2 HEM3_ECOLI
2 PsiBlast_PDB 85.4346% -74 - C4 -1GTK 8.8 HEM3_ECOLI
4 PsiBlast_PDB 85.4046% -72 - C4 -1PDA 9.5 HEM3_ECOLI
3 PsiBlast_PDB 85.1846% -71 - C4 -1YPN 7.7 HEM3_ECOLI
8 PsiBlast_PDB 83.3341% -72 - C4 -4HTG 9.8 HEM3_ARATH
6 PsiBlast_PDB 82.0839% -70 - C4 -4MLQ 8.8 ?
7 PsiBlast_PDB 81.9539% -70 - C4 -4MLV 9.0 ?
10 PsiBlast_PDB 75.5341% -86 - C4 -3EQ1 - HEM3_HUMAN -
22 PsiBlast_CBE 75.3241% -87 - C4 -3EQ1 - HEM3_HUMAN -
9 PsiBlast_PDB 75.1741% -87 - C4 -3ECR - HEM3_HUMAN -
21 PsiBlast_CBE 73.2541% -83 - C4 -3ECR - HEM3_HUMAN -
51 Fugue 67.9746% -55 - C4 -1PDA Error ?
55 Fugue 50.1416% -41 - C4 -3E4R - ? -
54 Fugue 42.2022% -14 * C5 *2A35 - ? -
58 Fugue 42.0212% -21 - C4 -3UIF - ? -
46 HHSearch 34.6528% -69 - C4 -1SW5 - ? -
42 HHSearch 34.2918% -47 - C4 -2X26 - SSUA_ECOLI -