@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : jhp_0239: (2015-12-13 )
MADVVVGIQWGDEGKGKIVDRIAKDYDFVVRYQGGHNAGHTIVHKGVKHSLHLMPSGVLYPKCKNIISSAVVVSVKDLCEEISAFEDLENRLFISDRAHVILPYHAKKDAFKEKSQNIGTTKKGIGPCYEDKMARSGIRMGDLLDDKILEEKLNAHFKAIEPFKKAYDLGENYEKDLMGYFKTYAPKICPFIKDTTSMLIEANQKGEKILLEGAQGTLLDIDLGTYPFVTSSNTTSASACVSTGLNPKAINEVIGITKAYSTRVGNGPFPSEDTTPMGDHLRTKGVEFGTTTKRPRRCGWLDLVALKYACALNGCTQLALMKLDVLDGIDAIKVCVAYERKGERLEAFPSDLKDCTPIYQTFKGWEKSVGVRKLDDLEPNAREYIRFIEKEVGVKIGLISTSPEREDTIFL

Atome Classification :

(42 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

RPD_A_5(1QF4)
PURA_ECOLI
[Raw transfer]




2SA_A_5(1MEZ)
PURA1_MOUSE
[Raw transfer]




DOI_A_3(2DGN)
PURA1_MOUSE
[Raw transfer]




DOI_A_3(2GCQ)
PURA_ECOLI
[Raw transfer]




RPL_A_5(1QF5)
PURA_ECOLI
[Raw transfer]




RPL_A_5(1QF5)
PURA_ECOLI
[Raw transfer]




IMP_C_3(1KJX)
PURA_ECOLI
[Raw transfer]




IMP_A_8(1IWE)
PURA1_MOUSE
[Raw transfer]




AMP_E_5(1MF1)
PURA1_MOUSE
[Raw transfer]




IMP_A_5(1KKF)
PURA_ECOLI
[Raw transfer]




IMP_E_5(1KKB)
PURA_ECOLI
[Raw transfer]




AMP_C_3(1SON)
PURA_ECOLI
[Raw transfer]




H5P_A_6(1SOO)
PURA_ECOLI
[Raw transfer]




GDP_A_6(1P9B)
PURA_PLAFA
[Raw transfer]




GDP_A_5(1CG0)
PURA_ECOLI
[Raw transfer]




GDP_A_4(1CIB)
PURA_ECOLI
[Raw transfer]




GDP_D_4(1DJ2)
PURA_ARATH
[Raw transfer]




GDP_A_6(1P9B)
PURA_PLAFA
[Raw transfer]




GDP_A_4(2GCQ)
PURA_ECOLI
[Raw transfer]




GPX_A_4(1CH8)
PURA_ECOLI
[Raw transfer]




GDP_A_4(1CG4)
PURA_ECOLI
[Raw transfer]




GDP_A_5(1MF0)
PURA1_MOUSE
[Raw transfer]




GDP_A_5(1LON)
PURA1_MOUSE
[Raw transfer]




GDP_A_6(1LNY)
PURA1_MOUSE
[Raw transfer]




GDP_C_3(1DJ3)
PURA_WHEAT
[Raw transfer]




GDP_A_4(2DGN)
PURA1_MOUSE
[Raw transfer]




GDP_B_7(1LNY)
PURA1_MOUSE
[Raw transfer]




GDP_D_4(1DJ3)
PURA_WHEAT
[Raw transfer]




GDP_A_5(1CG1)
PURA_ECOLI
[Raw transfer]




GDP_A_5(1CG3)
PURA_ECOLI
[Raw transfer]




DPO_A_3(1KKF)
PURA_ECOLI
[Raw transfer]




GTP_C_3(1LOO)
PURA1_MOUSE
[Raw transfer]




GCP_B_4(1HOP)
PURA_ECOLI
[Raw transfer]




GDP_C_3(1DJ2)
PURA_ARATH
[Raw transfer]




GDP_C_3(1DJ2)
PURA_ARATH
[Raw transfer]




GDP_A_2(2V40)
PURA2_HUMAN
[Raw transfer]




GDP_A_2(2V40)
PURA2_HUMAN
[Raw transfer]




IMP_B_7(1IWE)
PURA1_MOUSE
[Raw transfer]




HAD_C_3(1KKB)
PURA_ECOLI
[Raw transfer]




CIT_A_2(3R7T)
PURA_CAMJE
[Raw transfer]




CIT_A_2(3R7T)
PURA_CAMJE
[Raw transfer]




39 HHSearch 97.2653% -90 - C4 -3R7T 3.3 PURA_CAMJE
1 PsiBlast_PDB 96.7851% -88 - C4 -3R7T 3.3 PURA_CAMJE
37 HHSearch 92.4246% -93 - C4 -2V40 6.3 PURA2_HUMAN
41 HHSearch 92.3844% -84 - C4 -3HID - PURA_YERPE -
28 PsiBlast_CBE 92.1044% -95 - C4 -2V40 6.3 PURA2_HUMAN
23 PsiBlast_CBE 92.0145% -79 - C4 -1SOO 5.2 PURA_ECOLI
13 PsiBlast_PDB 91.7245% -74 - C4 -1KKF 7.1 PURA_ECOLI
24 PsiBlast_CBE 91.6545% -83 - C4 -1HOP 5.6 PURA_ECOLI
33 PsiBlast_CBE 91.3743% -79 - C4 -3HID - PURA_YERPE -
19 PsiBlast_PDB 91.3545% -75 - C4 -2GCQ 8.5 PURA_ECOLI
17 PsiBlast_PDB 91.3245% -79 - C4 -1QF5 6.8 PURA_ECOLI
30 PsiBlast_CBE 91.2945% -76 - C4 -1CG3 7.6 PURA_ECOLI
18 PsiBlast_PDB 91.2445% -77 - C4 -1CIB 6.9 PURA_ECOLI
15 PsiBlast_PDB 91.2345% -76 - C4 -1CH8 7.5 PURA_ECOLI
48 Fugue 91.2145% -84 - C4 -1ADE - PURA_ECOLI -
25 PsiBlast_CBE 91.1945% -76 - C4 -1CG1 7.6 PURA_ECOLI
35 PsiBlast_CBE 91.0843% -87 - C4 -3UE9 - PURA_BURTA -
2 PsiBlast_PDB 90.8643% -80 - C4 -1J4B - PURA1_MOUSE -
22 PsiBlast_CBE 90.8443% -81 - C4 -1IWE 5.9 PURA1_MOUSE
26 PsiBlast_CBE 90.7242% -84 - C4 -1DJ3 6.4 PURA_WHEAT
47 Fugue 90.6846% -80 * C4 *1QF5 6.8 PURA_ECOLI
29 PsiBlast_CBE 90.6745% -74 - C4 -1CG4 7.9 PURA_ECOLI
6 PsiBlast_PDB 90.6643% -81 - C4 -1LOO 6.0 PURA1_MOUSE
16 PsiBlast_PDB 90.4745% -80 - C4 -1QF4 7.4 PURA_ECOLI
12 PsiBlast_PDB 90.4745% -76 - C4 -1KKB 6.6 PURA_ECOLI
27 PsiBlast_CBE 90.4442% -84 - C4 -1DJ3 6.3 PURA_WHEAT
20 PsiBlast_PDB 90.4245% -77 - C4 -1SON 5.4 PURA_ECOLI
3 PsiBlast_PDB 90.2843% -76 - C4 -1IWE 6.2 PURA1_MOUSE
38 HHSearch 90.2044% -82 - C4 -1DJ2 6.1 PURA_ARATH
14 PsiBlast_PDB 90.1245% -74 - C4 -1CG0 7.6 PURA_ECOLI
10 PsiBlast_PDB 90.0143% -78 - C4 -2DGN 7.8 PURA1_MOUSE
4 PsiBlast_PDB 89.7843% -77 - C4 -1LNY 6.7 PURA1_MOUSE
11 PsiBlast_PDB 89.7645% -75 - C4 -1KJX 5.5 PURA_ECOLI
36 PsiBlast_CBE 89.7040% -76 - C4 -1P9B 8.3 PURA_PLAFA
8 PsiBlast_PDB 89.5743% -76 - C4 -1MF0 6.8 PURA1_MOUSE
5 PsiBlast_PDB 89.3343% -75 - C4 -1LON 6.4 PURA1_MOUSE
7 PsiBlast_PDB 89.3243% -76 - C4 -1MEZ 7.1 PURA1_MOUSE
32 PsiBlast_CBE 89.1542% -84 - C4 -1DJ2 6.1 PURA_ARATH
21 PsiBlast_CBE 89.1143% -78 - C4 -1LNY 7.1 PURA1_MOUSE
9 PsiBlast_PDB 88.9243% -77 - C4 -1MF1 5.6 PURA1_MOUSE
42 HHSearch 88.8340% -76 - C4 -1P9B 8.3 PURA_PLAFA
31 PsiBlast_CBE 88.8342% -83 - C4 -1DJ2 6.4 PURA_ARATH