@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : jhp_0341: (2015-12-14 )
MPKKCRHLLQTSDLSLDEIKLLLNKASVYANDFNAVSLETREKMQDKIIVALFFENSTRTVSSFEIASLRLGAKIVKLNMQTSSTSKGETLIDTFKNIHAMQPDAIITRHAFSSAPFKLAEFSQCPLINAGSGTSAHPTQALLDLLTLYRHFGSLENLKGKKIAFIGDVKNSRVANSNIKLLQRLGLEIMLCAPSSMLPITPLKTTHNIEEAIGFADILMSLRTQTERHNAPIFASLKDYGNAYCITQKRLETHAKNKEVIILHPGPVHRDIDIESAVLEDKRSKVLEQVKNGVAMRMAVLEFLLLD

Atome Classification :

(58 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

6PR_A_8(2H3E)
PYRB_ECOLI
[Raw transfer]




PAL_B_5(4BJH)
PYRB_AQUAE
[Raw transfer]




PAL_C_8(1EKX)
PYRB_ECOLI
[Raw transfer]




PAL_A_5(4KH0)
?
[Raw transfer]




PAL_A_5(4KH1)
?
[Raw transfer]




PAL_A_5(4KGX)
?
[Raw transfer]




PAL_D_4(1ML4)
PYRB_PYRAB
[Raw transfer]




PAL_C_8(4KGX)
?
[Raw transfer]




PAL_C_8(4KGV)
?
[Raw transfer]




PAL_C_8(4F04)
PYRB_ECOLI
[Raw transfer]




PAL_A_5(4F04)
PYRB_ECOLI
[Raw transfer]




PAL_A_7(1D09)
PYRB_ECOLI
[Raw transfer]




PAL_D_4(1ML4)
PYRB_PYRAB
[Raw transfer]




PAL_C_8(8ATC)
PYRB_ECOLI
[Raw transfer]




6PR_C_7(2H3E)
PYRB_ECOLI
[Raw transfer]




PAL_C_10(4KH0)
?
[Raw transfer]




PAL_C_11(4KH1)
?
[Raw transfer]




PAL_B_7(1EKX)
PYRB_ECOLI
[Raw transfer]




PAL_A_6(1EKX)
PYRB_ECOLI
[Raw transfer]




PAL_A_5(4KGV)
?
[Raw transfer]




PAL_A_7(8ATC)
PYRB_ECOLI
[Raw transfer]




1IP_C_9(2IPO)
PYRB_ECOLI
[Raw transfer]




1IP_A_7(2IPO)
PYRB_ECOLI
[Raw transfer]




PAL_C_8(1D09)
PYRB_ECOLI
[Raw transfer]




CP_A_4(3R7F)
PYRB_BACSU
[Raw transfer]




EOP_A_7(2FZC)
PYRB_ECOLI
[Raw transfer]




CP_A_4(3R7F)
PYRB_BACSU
[Raw transfer]




CP_C_16(3R7F)
PYRB_BACSU
[Raw transfer]




EOB_A_9(2FZG)
PYRB_ECOLI
[Raw transfer]




EOB_C_10(2FZG)
PYRB_ECOLI
[Raw transfer]




CP_B_11(3R7F)
PYRB_BACSU
[Raw transfer]




EOP_C_8(2FZC)
PYRB_ECOLI
[Raw transfer]




EOZ_C_8(2FZK)
PYRB_ECOLI
[Raw transfer]




EOZ_A_7(2FZK)
PYRB_ECOLI
[Raw transfer]




FLC_B_5(3D6N)
PYRB_AQUAE
[Raw transfer]




PG4_A_4(3LXM)
PYRB_YERPE
[Raw transfer]




AL0_G_9(2AIR)
PYRB_ECOLI
[Raw transfer]




AL0_A_10(2AIR)
PYRB_ECOLI
[Raw transfer]




NCD_G_10(1R0C)
PYRB_ECOLI
[Raw transfer]




NCD_A_9(1R0C)
PYRB_ECOLI
[Raw transfer]




CP_C_13(1ZA2)
PYRB_ECOLI
[Raw transfer]




CP_A_12(1ZA2)
PYRB_ECOLI
[Raw transfer]




111 HHSearch 97.6539%-105 - C9 -3R7F 4.5 PYRB_BACSU
3 PsiBlast_PDB 94.3037%-101 - C9 -3R7F 4.5 PYRB_BACSU
26 PsiBlast_CBE 93.0137%-100 - C9 -3R7F 4.2 PYRB_BACSU
27 PsiBlast_CBE 92.5537%-103 - C9 -3R7F 3.5 PYRB_BACSU
28 PsiBlast_CBE 91.7937%-105 - C9 -3R7D - PYRB_BACSU -
29 PsiBlast_CBE 91.0637%-103 - C9 -3R7D - PYRB_BACSU -
46 PsiBlast_CBE 91.0032%-110 - C9 -2RGW - PYRB_METJA -
45 PsiBlast_CBE 90.9132%-109 - C9 -2RGW - PYRB_METJA -
48 PsiBlast_CBE 90.8032%-110 - C9 -2RGW - PYRB_METJA -
49 PsiBlast_CBE 90.7032%-110 - C9 -2RGW - PYRB_METJA -
2 PsiBlast_PDB 90.5837% -98 - C9 -3R7D - PYRB_BACSU -
4 PsiBlast_PDB 90.4737% -96 - C9 -3R7L - PYRB_BACSU -
41 PsiBlast_CBE 90.4132%-103 - C9 -3E2P - PYRB_METJA -
47 PsiBlast_CBE 90.4032%-110 - C9 -2RGW - PYRB_METJA -
11 PsiBlast_PDB 90.1232%-108 - C9 -2RGW - PYRB_METJA -
24 PsiBlast_CBE 90.0737% -98 - C9 -3R7L - PYRB_BACSU -
23 PsiBlast_CBE 89.8337% -99 - C9 -3R7L - PYRB_BACSU -
22 PsiBlast_CBE 89.5937% -97 - C9 -3R7L - PYRB_BACSU -
13 PsiBlast_PDB 89.5632%-102 - C9 -4EKN - PYRB_METJA -
39 PsiBlast_CBE 89.5332%-102 - C9 -3E2P - PYRB_METJA -
6 PsiBlast_PDB 88.8333%-101 - C9 -3D6N 2.9 PYRB_AQUAE
8 PsiBlast_PDB 87.7935%-102 - C9 -1ML4 7.9 PYRB_PYRAB
5 PsiBlast_PDB 87.5033%-102 - C9 -4BJH 6.4 PYRB_AQUAE
113 HHSearch 86.8136% -89 - C9 -1ML4 8.0 PYRB_PYRAB
15 PsiBlast_PDB 84.2433% -95 - C9 -3LXM 2.7 PYRB_YERPE
16 PsiBlast_PDB 84.1833% -84 - C9 -1D09 7.1 PYRB_ECOLI
86 PsiBlast_CBE 83.8133% -92 - C9 -1R0C 3.7 PYRB_ECOLI
85 PsiBlast_CBE 83.8033% -93 - C9 -1R0C 3.6 PYRB_ECOLI
84 PsiBlast_CBE 83.7833% -93 - C9 -1ZA2 2.8 PYRB_ECOLI
83 PsiBlast_CBE 83.7433% -89 - C9 -1ZA2 2.9 PYRB_ECOLI
82 PsiBlast_CBE 83.6833% -96 - C9 -2AIR 3.1 PYRB_ECOLI
77 PsiBlast_CBE 83.1233% -90 - C9 -2FZG 2.9 PYRB_ECOLI
75 PsiBlast_CBE 82.8233% -89 - C9 -2FZK 2.3 PYRB_ECOLI
81 PsiBlast_CBE 82.6833% -89 - C9 -2AIR 2.9 PYRB_ECOLI
78 PsiBlast_CBE 82.4733% -86 - C9 -2FZG 5.1 PYRB_ECOLI
80 PsiBlast_CBE 82.4233% -87 - C9 -2FZC 3.5 PYRB_ECOLI
79 PsiBlast_CBE 82.4033% -90 - C9 -2FZC 2.2 PYRB_ECOLI
99 PsiBlast_CBE 82.1833% -87 - C9 -8ATC 6.6 PYRB_ECOLI
100 PsiBlast_CBE 82.1533% -84 - C9 -8ATC 6.1 PYRB_ECOLI
76 PsiBlast_CBE 81.9833% -88 - C9 -2FZK 3.8 PYRB_ECOLI
64 PsiBlast_CBE 81.8333% -85 - C9 -4KGV 8.1 ?
52 PsiBlast_CBE 81.7733% -84 - C9 -1D09 6.8 PYRB_ECOLI
58 PsiBlast_CBE 81.7033% -86 - C9 -4KH0 8.2 ?
73 PsiBlast_CBE 81.6033% -83 - C9 -2H3E 7.3 PYRB_ECOLI
56 PsiBlast_CBE 81.5933% -86 - C9 -4KH1 7.8 ?
54 PsiBlast_CBE 81.5733% -87 - C9 -1EKX 7.6 PYRB_ECOLI
62 PsiBlast_CBE 81.4933% -83 - C9 -4KGX 7.9 ?
63 PsiBlast_CBE 81.3933% -86 - C9 -4KGX 7.9 ?
65 PsiBlast_CBE 81.3533% -87 - C9 -4KGV 8.0 ?
55 PsiBlast_CBE 81.3333% -89 - C9 -1EKX 7.5 PYRB_ECOLI
57 PsiBlast_CBE 81.2233% -85 - C9 -4KH1 7.9 ?
71 PsiBlast_CBE 81.1933% -86 - C9 -2IPO 6.5 PYRB_ECOLI
67 PsiBlast_CBE 81.0133% -88 - C9 -4F04 7.8 PYRB_ECOLI
68 PsiBlast_CBE 80.9333% -85 - C9 -4F04 8.0 PYRB_ECOLI
18 PsiBlast_PDB 80.9133% -87 - C9 -1EKX 7.6 PYRB_ECOLI
72 PsiBlast_CBE 80.7933% -86 - C9 -2IPO 5.9 PYRB_ECOLI
74 PsiBlast_CBE 80.4933% -84 - C9 -2H3E 7.1 PYRB_ECOLI
59 PsiBlast_CBE 80.1833% -87 - C9 -4KH0 7.9 ?