@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : jhp_0343: (2015-12-14 )
MKLFFRRYSKYLKEHYKSFIVVLFSSLVVALSTAWGTYLVKPTLDEIFINKDTHMLKILPFLVILAYLGKSGGMYVGTYFTNFIGLDIVKKIRNAMLESLLKMEMDFFNRTKKGELIARITNDIGLIRASLSNYLSESLREGLTIVGLVGVVIYQSPKLALVGLVIMPLAAIPISKIIRKVKKLAKAHQESNAKITARLSEVFNNVEAIKISNGEKLEHRAFVKENEAFFKIGIKNIAVAEISSPLMEFLGSIAIALVIYLGGNEVIKGHISVGAFFSFITALFMLYTPIKRLTRIVSNFQEALVASDRIHEILEREPAIIDGELTLDDAIHTIEFKKVWLAYALEDQERYVLSDINLKFQQNEIVALKGESGSGKSSLVNLILRLYEPSKGEIFINDQKIESITQKSLREKISVVTQRVFIFNGSVAENVAYGLEIDEIKIKECLKKAQALDFVEKMPHGIESVLDEFGANLSGGQRQRIAIARALYKDAQVLIFDEATSALDNHTEESVKQSILELKQNRLIILISHNPSTLKLATKHVKLEHGRLIEC

Atome Classification :

(32 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_A_3(2IXE)
TAP1_RAT
[Raw transfer]



ATP_A_3(2IXE)
TAP1_RAT
[Raw transfer]



ATP_B_8(2IXF)
TAP1_RAT
[Raw transfer]



ACP_A_4(4AYX)
ABCBA_HUMAN
[Raw transfer]



ATP_A_2(3NH9)

[Raw transfer]



ADP_A_3(1JJ7)

[Raw transfer]



ATP_D_15(2IXF)

[Raw transfer]



ATP_E_5(2FGJ)
HLYBP_ECOLX
[Raw transfer]



ATP_C_12(2IXF)
TAP1_RAT
[Raw transfer]



AGS_A_3(4S0F)
?
[Raw transfer]



ADP_A_2(5DGX)
?
[Raw transfer]



ATP_A_5(2IXF)
TAP1_RAT
[Raw transfer]



ATP_A_7(1MV5)
LMRA_LACLA
[Raw transfer]



ATP_A_7(1MV5)
LMRA_LACLA
[Raw transfer]



AGS_B_4(4S0F)
?
[Raw transfer]
8 PsiBlast_PDB 88.1230%-107 - C3 -4Q4H - Y288_THEMA -
102 Fugue 87.4031% -95 - C3 -3B60 - MSBA_SALTY -
5 PsiBlast_PDB 86.9231% -96 - C3 -3B60 - MSBA_SALTY -
23 PsiBlast_CBE 86.7231% -96 - C3 -3B60 - MSBA_SALTY -
22 PsiBlast_CBE 86.7031% -96 - C3 -3B60 - MSBA_SALTY -
21 PsiBlast_CBE 86.6631% -96 - C3 -3B60 - MSBA_SALTY -
7 PsiBlast_PDB 86.5530%-105 - C3 -4Q4A - Y288_THEMA -
111 HHSearch 86.4231% -96 - C3 -3B60 - MSBA_SALTY -
6 PsiBlast_PDB 86.3730%-104 - C3 -3QF4 - Y288_THEMA -
9 PsiBlast_PDB 86.0130%-107 - C3 -4Q4J - Y288_THEMA -
14 PsiBlast_PDB 85.6432%-108 - C3 -4RY2 - ? -
15 PsiBlast_PDB 83.6432% -98 - C3 -4S0F 4.5 ?
30 PsiBlast_CBE 83.5932%-100 - C3 -4S0F 3.7 ?
113 HHSearch 83.5030% -98 - C3 -3ZDQ - ABCBA_HUMAN -
12 PsiBlast_PDB 79.9833% -97 - C3 -4AYX 5.7 ABCBA_HUMAN
13 PsiBlast_PDB 79.4533% -97 - C3 -3ZDQ - ABCBA_HUMAN -
11 PsiBlast_PDB 78.0933% -96 - C3 -4AYT - ABCBA_HUMAN -
17 PsiBlast_PDB 75.8429% -89 - C3 -2ONJ - Y1866_STAAM -
10 PsiBlast_PDB 75.7933% -99 - C3 -4AYW - ABCBA_HUMAN -
16 PsiBlast_PDB 75.0629% -88 - C3 -2HYD - Y1866_STAAM -
31 PsiBlast_CBE 59.0539% -92 - C3 -5DGX 5.5 ?
61 PsiBlast_CBE 55.9035% -92 - C3 -3NH9 6.4
71 PsiBlast_CBE 54.7931% -88 - C3 -2IXE 7.2 TAP1_RAT
65 PsiBlast_CBE 54.6933% -86 - C3 -1JJ7 6.2
53 PsiBlast_CBE 54.3536% -99 - C3 -2FGJ 6.8 HLYBP_ECOLX
123 HHSearch 54.3131% -88 - C3 -2IXE 7.9 TAP1_RAT
67 PsiBlast_CBE 53.7431% -85 - C3 -2IXF 7.7 TAP1_RAT
66 PsiBlast_CBE 52.5531% -82 - C3 -2IXF 7.4
69 PsiBlast_CBE 51.7831% -85 - C3 -2IXF 7.5 TAP1_RAT
68 PsiBlast_CBE 51.1831% -82 - C3 -2IXF 7.5 TAP1_RAT
120 HHSearch 49.1937% -83 - C3 -1MV5 4.8 LMRA_LACLA
36 PsiBlast_CBE 47.8338% -72 - C3 -1MV5 4.6 LMRA_LACLA