@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : jhp_0353: (2015-12-14 )
MKESFYIEGMTCTACSSGIERSLGRKSFVKKIEVSLLNKSANIEFNENETNLDEIFKLIEKLGYSPKKTLAEEKKEFFSPNVKLALAVIFTLFVVYLSMGAMLSPSLLPESLLTINHHSNFLNACLQLIGALIVMHLGRDFYIQGFKALWHRQPNMSSLIAIGTSAALISSLWQLYLVYTNHYTDQWSYGHYYFESVCVILMFVMVGKRIENVSKDKALDAMQALMKNAPKTALKMHNNQQIEVLVDSIVVGDILKVLPGSAIAVDGEIIEGEGELDESMLSGEALPVYKKVGDKVFSGTLNSNTSFLMKATQDNKNSTLSQIIEMIHNAQSSKAEISRLADKVSSVFVPSVIAIAVLAFVVWLIIAPKPDFWWNFRTALEVFVSVLVISCPCALGLATPMSILVANQKASSLGLFFKDAKSLEKARLVNTIVFDKTGTLTNGKPVVKSIHSNIELLELLSLASSIEKSSEHVIAKGIVEYAKERNAPLKDISEVKVKTGFGISAKVDYQGAKEIIKVGNSEFFNPINTLEIKENGILVFVGRAINEKEDELLGAFVLEDLPKKGVKEHIAQIKNLGINTFLLSGDNRENVKKCALELGIDGYISNAKPQDKLNKIKELKEKGRIVMMVGDGLNDAPSLAMSDVAVVMAKGSDVSVQAADIVSFNNDIKSVYSAIKLSQATIKNIKENLFWAFCYNSVFIPLACGVLYKANIMLSPAIAGLAMSLSSVSVVLNSQRLRNFKIKDH

Atome Classification :

(27 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_B_5(2YJ4)
?
[Raw transfer]



ATP_B_4(2YJ5)
?
[Raw transfer]



ACP_B_5(3A1E)

[Raw transfer]



ACP_A_3(3A1E)
COPA_ARCFU
[Raw transfer]



ACP_B_5(3A1C)
?
[Raw transfer]



ACP_A_3(3A1C)
?
[Raw transfer]



ACP_A_3(3A1C)
?
[Raw transfer]



ADP_B_5(3A1D)
?
[Raw transfer]



MGF_A_3(4BEV)
?
[Raw transfer]
98 Fugue 85.8437% -91 - C3 -3RFU - ? -
4 PsiBlast_PDB 85.3734% -84 - C3 -3J09 - COPA_ARCFU -
78 HHSearch 84.5835% -78 - C3 -3J09 - COPA_ARCFU -
3 PsiBlast_PDB 83.5737% -83 - C3 -4BYG - ? -
2 PsiBlast_PDB 83.4037% -82 - C3 -4BEV 2.4 ?
22 PsiBlast_CBE 83.1337% -84 - C3 -3RFU - ? -
23 PsiBlast_CBE 83.1137% -84 - C3 -3RFU - ? -
21 PsiBlast_CBE 82.9937% -84 - C3 -3RFU - ? -
1 PsiBlast_PDB 82.9937% -84 - C3 -3RFU - ? -
79 HHSearch 75.3336% -78 - C3 -3J08 - COPA_ARCFU -
5 PsiBlast_PDB 74.5336% -77 - C3 -3J08 - COPA_ARCFU -
99 Fugue 74.1427% -70 - C3 -4UMW - ? -
7 PsiBlast_PDB 72.1726% -75 - C6 -4UMW - ? -
6 PsiBlast_PDB 70.0026% -69 * C6 *4UMV - ? -
102 Fugue 64.1120% -60 - C3 -3B8E - AT1A1_PIG -
106 Fugue 62.1817% -67 - C2 -1SU4 - AT2A1_RABIT -
8 PsiBlast_PDB 56.8936% -58 - C3 -3SKX - -
19 PsiBlast_PDB 55.8722% -50 - C3 -1MHS - PMA1_NEUCR -
12 PsiBlast_PDB 55.4535% -50 - C3 -3A1E 6.2 COPA_ARCFU
28 PsiBlast_CBE 55.4435% -50 - C3 -2YJ6 - ? -
25 PsiBlast_CBE 54.6435% -51 - C3 -3A1C 6.8 ?
24 PsiBlast_CBE 54.2235% -53 - C3 -3A1D 5.7 ?
10 PsiBlast_PDB 54.0935% -48 - C3 -3A1C 6.6 ?
26 PsiBlast_CBE 53.4935% -51 - C3 -3A1E 6.2
29 PsiBlast_CBE 53.2935% -48 - C3 -2YJ5 5.8 ?
30 PsiBlast_CBE 53.0035% -42 - C3 -2YJ4 6.9 ?
85 HHSearch 52.4334% -38 * C3 *3A1C 6.6 ?