@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : jhp_0356: (2015-12-14 )
MKPTNEPKKPFFQSPIVLAVLGGILLIFFLRSFNSDGSFSDNFLASSTKNVSYHEIKQLISNNEVENVSIGQTLIKASHKEGNNRVIYIAKRVPDLTLVPLLDEKKINYSGFSESNFFTDMLGWLMPILVILGLWMFMANRMQKNMGGGIFGMGSAKKLINAEKPNVRFNDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGMISGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNNQKEVKQQHLKEAVERGIAGLEKKSRRISPKEKKIVAYHESGHAVISEMTKGSTRVNKVSIIPRGMAALGYTLNTPEENKYLMQKHELIAEIDVLLGGRAAEEVFLEEISTGASNDLERATDIIKGMVSYYGMSSVSGLMVLEKQRNAFLGGGYGSSREFSEKTAEEMDLFIKNLLEERYQHVKQTLSDYREAIEIMVKELFDKEVITGERVREIISEYEAANNLESRLIPLEEQAS

Atome Classification :

(33 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ADP_B_7(2R65)
FTSH_HELPY
[Raw transfer]




ADP_D_9(2R65)
FTSH_HELPY
[Raw transfer]




ADP_C_8(2R65)
FTSH_HELPY
[Raw transfer]




ADP_E_10(2R65)
FTSH_HELPY
[Raw transfer]




ADP_B_5(3H4M)
PAN_METJA
[Raw transfer]




ADP_A_2(2QZ4)

[Raw transfer]




ADP_A_2(2QZ4)

[Raw transfer]




ADP_A_6(2R65)
FTSH_HELPY
[Raw transfer]




ADP_C_9(4WW0)
FTSH_AQUAE
[Raw transfer]




ADP_C_6(3H4M)
PAN_METJA
[Raw transfer]




ADP_A_5(4WW0)
FTSH_AQUAE
[Raw transfer]




ADP_A_4(3H4M)
PAN_METJA
[Raw transfer]




ADP_A_4(3H4M)
PAN_METJA
[Raw transfer]




ANP_B_2(1IY0)
FTSH_THET8
[Raw transfer]




ADP_B_2(1IY1)
FTSH_THET8
[Raw transfer]




4 PsiBlast_PDB 91.4654% -93 - C1 -4WW0 8.6 FTSH_AQUAE
33 PsiBlast_CBE 91.0954% -92 - C1 -4WW0 8.1 FTSH_AQUAE
27 PsiBlast_CBE 89.0653% -91 - C1 -2CEA - FTSH_THEMA -
26 PsiBlast_CBE 88.6153% -88 - C1 -2CEA - FTSH_THEMA -
29 PsiBlast_CBE 88.5153% -88 - C1 -2CE7 - FTSH_THEMA -
5 PsiBlast_PDB 87.9954% -87 - C1 -4Z8X - FTSH_AQUAE -
101 Fugue 87.9551% -88 - C1 -2CE7 - FTSH_THEMA -
30 PsiBlast_CBE 87.6953% -90 - C1 -2CE7 - FTSH_THEMA -
32 PsiBlast_CBE 87.5454% -87 - C1 -4Z8X - FTSH_AQUAE -
28 PsiBlast_CBE 87.3253% -89 - C1 -2CE7 - FTSH_THEMA -
25 PsiBlast_CBE 87.0853% -91 - C1 -2CEA - FTSH_THEMA -
31 PsiBlast_CBE 87.0654% -86 - C1 -4Z8X - FTSH_AQUAE -
3 PsiBlast_PDB 85.2752% -82 - C1 -3KDS - FTSH_THEMA -
35 PsiBlast_CBE 80.2249% -78 - C1 -2DHR - FTSH_THET8 -
42 PsiBlast_CBE 79.8349% -77 - C1 -4EIW - FTSH_THET8 -
40 PsiBlast_CBE 79.7549% -77 - C1 -4EIW - FTSH_THET8 -
7 PsiBlast_PDB 79.5949% -77 - C1 -4EIW - FTSH_THET8 -
112 HHSearch 79.0950% -74 - C1 -2DHR - FTSH_THET8 -
6 PsiBlast_PDB 78.9749% -77 - C1 -2DHR - FTSH_THET8 -
37 PsiBlast_CBE 78.8249% -78 - C1 -2DHR - FTSH_THET8 -
22 PsiBlast_CBE 77.4098%-102 - C1 -2R65 5.4 FTSH_HELPY
24 PsiBlast_CBE 75.5198% -98 - C1 -2R65 5.5 FTSH_HELPY
2 PsiBlast_PDB 73.7698% -92 - C1 -2R65 6.2 FTSH_HELPY
21 PsiBlast_CBE 73.4198% -93 - C1 -2R65 5.6 FTSH_HELPY
23 PsiBlast_CBE 71.5798% -86 - C1 -2R65 7.0 FTSH_HELPY
12 PsiBlast_PDB 65.0863% -85 - C1 -1IY1 5.9 FTSH_THET8
14 PsiBlast_PDB 64.2550% -86 - C1 -3H4M 7.3 PAN_METJA
128 HHSearch 63.8548% -82 - C1 -3H4M 7.2 PAN_METJA
45 PsiBlast_CBE 63.4750% -84 - C1 -3H4M 7.1 PAN_METJA
44 PsiBlast_CBE 63.2550% -88 - C1 -3H4M 6.5 PAN_METJA
120 HHSearch 62.5257% -89 - C1 -2QZ4 8.3
11 PsiBlast_PDB 62.4863% -82 - C1 -1IY0 5.5 FTSH_THET8
13 PsiBlast_PDB 62.4056% -89 - C1 -2QZ4 8.3