@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : jhp_0404: (2015-12-15 )
MSLIRVNGEAFKLSLESLEEDPFETKETLETLETLIKQTSVVLLAAGESKRFSRAIKKQWLRSHHTPLWLSVYESFKEALDFKEVILVVSELDYVYIQRHYPKIKLVKGGASRQESVRNALKVIDSTYTITSDVARGLANMEALKSLFLTLQQTSHYCIAPYLPCYDTAIYYNEALDREAIKLIQTPQLSHTKTLQSALNQGGFKDESSAILQAFPNSVSYIEGSKDLHKLTTSGDLKFFTPFFNPAKDTFIGMGFDTHAFIKDKPMVLGGVVLDCEFGLKAHSDGDALLHAVIDAILGAIKGGDIGEWFPDNDPKYKNASSKELLKIVLDFSQSIGFELLEMGATIFSEIPKITPYKPAILENLSQLLGLEKSQISLKATTMEKMGFIGKQEGLLVQAHVSMRYKQKL

Atome Classification :

(40 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

1AA_C_15(2AMT)
ISPF_ECOLI
[Raw transfer]




1AA_E_17(2AMT)
ISPF_ECOLI
[Raw transfer]




1AA_E_18(2AMT)
ISPF_ECOLI
[Raw transfer]




GOL_C_9(3GHZ)
ISPF_SALTY
[Raw transfer]




GOL_A_4(3GHZ)
ISPF_SALTY
[Raw transfer]




1AA_C_14(2AMT)
ISPF_ECOLI
[Raw transfer]




CDP_A_4(1YQN)
ISPF_ECOLI
[Raw transfer]




1AA_D_19(2AMT)
ISPF_ECOLI
[Raw transfer]




AO9_A_9(3Q8H)
ISPF_BURPS
[Raw transfer]




AO9_A_5(3Q8H)
ISPF_BURPS
[Raw transfer]




C_A_3(1W55)
ISPDF_CAMJE
[Raw transfer]




AO9_B_11(3Q8H)
ISPF_BURPS
[Raw transfer]




CTN_C_24(3T80)
ISPF_SALTY
[Raw transfer]




C5P_A_5(2PMP)
ISPF_ARATH
[Raw transfer]




C5P_C_10(3F0G)
ISPF_BURP1
[Raw transfer]




CTN_B_17(3T80)
ISPF_SALTY
[Raw transfer]




C5P_D_12(3F0G)
ISPF_BURP1
[Raw transfer]




CIT_C_8(4C8I)
ISPF_BURCJ
[Raw transfer]




CIT_B_6(4C8I)
ISPF_BURCJ
[Raw transfer]




C5P_A_5(5B8F)
ISPF_PSEAE
[Raw transfer]




MSR_A_6(3P0Z)
ISPF_BURP1
[Raw transfer]




717_C_11(3MBM)
ISPF_BURP1
[Raw transfer]




717_B_10(3MBM)
ISPF_BURP1
[Raw transfer]




CIT_A_4(4C8I)
ISPF_BURCJ
[Raw transfer]




535_C_11(3K14)
ISPF_BURP1
[Raw transfer]




717_B_10(3IKF)
ISPF_BURPS
[Raw transfer]




1 PsiBlast_PDB 89.6441%-104 - C6 -1W55 - ISPDF_CAMJE -
2 PsiBlast_PDB 89.4241%-105 - C6 -1W57 - ISPDF_CAMJE -
102 HHSearch 88.5042% -99 - C6 -1W55 3.5 ISPDF_CAMJE
107 HHSearch 63.1338%-114 - C6 -3F0D - ISPF_BURP1 -
72 PsiBlast_CBE 62.4239%-119 - C6 -3F0D - ISPF_BURP1 -
98 PsiBlast_CBE 62.0145%-104 - C6 -2AMT 4.3 ISPF_ECOLI
52 PsiBlast_CBE 61.9239%-118 - C6 -3K14 - ISPF_BURP1 -
53 PsiBlast_CBE 61.6539%-113 - C6 -3JVH - ISPF_BURP1 -
104 HHSearch 61.5741%-114 - C6 -2PMP 3.4 ISPF_ARATH
63 PsiBlast_CBE 61.1339%-113 - C6 -3F0G 3.1 ISPF_BURP1
105 HHSearch 61.0942%-107 - C6 -1YQN 3.5 ISPF_ECOLI
58 PsiBlast_CBE 61.0839%-113 - C6 -3IEQ - ISPF_BURP1 -
12 PsiBlast_PDB 61.0839%-114 - C6 -3F0D - ISPF_BURP1 -
77 PsiBlast_CBE 60.9939%-116 - C6 -3IKE - ISPF_BURPS -
56 PsiBlast_CBE 60.9839%-114 - C6 -3IEW - ISPF_BURPS -
47 PsiBlast_CBE 60.7639%-115 - C6 -3KE1 - ISPF_BURP1 -
50 PsiBlast_CBE 60.6439%-113 - C6 -3K2X - ISPF_BURP1 -
74 PsiBlast_CBE 60.6139%-116 - C6 -3IKF 3.2 ISPF_BURPS
33 PsiBlast_CBE 60.5939%-112 - C6 -3QHD - ISPF_BURP1 -
19 PsiBlast_PDB 60.5639%-112 - C6 -3K14 - ISPF_BURP1 -
100 PsiBlast_CBE 60.5345%-103 - C6 -2AMT 4.0 ISPF_ECOLI
42 PsiBlast_CBE 60.4239%-111 - C6 -3P0Z 3.5 ISPF_BURP1
97 PsiBlast_CBE 60.3345%-104 - C6 -2AMT 3.1 ISPF_ECOLI
44 PsiBlast_CBE 59.9139%-113 - C6 -3MBM 2.9 ISPF_BURP1
101 PsiBlast_CBE 59.7845%-105 - C6 -2AMT 2.6 ISPF_ECOLI
35 PsiBlast_CBE 59.6039%-109 - C6 -3Q8H 3.4 ISPF_BURPS
34 PsiBlast_CBE 59.6039%-111 - C6 -3Q8H 3.7 ISPF_BURPS
43 PsiBlast_CBE 59.3639%-110 - C6 -3MBM 3.2 ISPF_BURP1
51 PsiBlast_CBE 59.3439%-115 - C6 -3K14 3.5 ISPF_BURP1
99 PsiBlast_CBE 59.2145%-103 - C6 -2AMT 4.0 ISPF_ECOLI
93 PsiBlast_CBE 59.2045%-105 - C6 -3T80 2.9 ISPF_SALTY
36 PsiBlast_CBE 58.7039%-116 - C6 -3Q8H 3.4 ISPF_BURPS
96 PsiBlast_CBE 58.6745%-105 - C6 -3GHZ 3.3 ISPF_SALTY
59 PsiBlast_CBE 58.3839%-112 - C6 -3F0G 2.7 ISPF_BURP1
11 PsiBlast_PDB 58.2437%-108 - C6 -4C8I 3.6 ISPF_BURCJ
94 PsiBlast_CBE 57.3345% -99 - C6 -3GHZ 2.4 ISPF_SALTY
26 PsiBlast_CBE 56.7037%-104 - C6 -4C8I 2.8 ISPF_BURCJ
25 PsiBlast_CBE 56.0137%-103 - C6 -4C8I 4.2 ISPF_BURCJ
24 PsiBlast_CBE 55.5943%-104 - C6 -5B8F 3.2 ISPF_PSEAE
91 PsiBlast_CBE 55.5845%-104 * C6 *3T80 3.1 ISPF_SALTY