@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : jhp_0405: (2015-12-15 )
MMKKTFFVSLALALSLNAGNIQIQNMPKVKERISVPSKEDTIYSYHDSIKDSIKAVVNISTEKKIKNNFIGGGVFNDPFFQQFFGDLGGMIPKERMERALGSGVIISKDGYIVTNNHVIDGADKIKVTIPGSNKEYSATLVGTDSESDLAVIRITKDNLPTIKFSDSNDILVGDLVFAIGNPFGVGESVTQGIVSALNKSGIGINSYENFIQTDASINPGNSGGALIDSRGGLVGINTAIISKTGGNHGIGFAIPSNMVKDIVTQLIKTGKIERGYLGVGLQDLSGDLQNSYDNKEGAVVISVEKDSPAKKAGILVWDLITEVNGKKVKNTNELRNLIGSMLPNQRVTLKVIRDKKERTFTLTLAERKNPNKKETISAQNGVQGQLNGLQVEDLTQKTKRSMRLSDDVQGVLVSQVNENSPAEQAGFRQGNIITKIEEVEVKSVADFNHALEKYKGKPKRFLVLDLNQGYRIILVK

Atome Classification :

(26 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

CHAIN_D_4(3QO6)
DEGP1_ARATH
[Raw transfer]
-
BOG_B_9(3TJO)
HTRA1_HUMAN
[Raw transfer]



DFP_A_2(3MH6)
DEGP_ECOLI
[Raw transfer]



CHAIN_H_8(3PV3)
?
[Raw transfer]
-
CHAIN_B_2(3OU0)
DEGP_ECOLI
[Raw transfer]
-
CHAIN_F_6(3PV3)
?
[Raw transfer]
-
CHAIN_F_6(3QO6)
DEGP1_ARATH
[Raw transfer]
-
CHAIN_G_7(3PV3)
?
[Raw transfer]
-
CHAIN_B_2(3MH7)
DEGP_ECOLI
[Raw transfer]
-
CHAIN_Z_25(3STJ)
DEGQ_ECOLI
[Raw transfer]
-
CHAIN_E_5(3PV3)
?
[Raw transfer]
-
CHAIN_B_2(3NZI)
HTRA1_HUMAN
[Raw transfer]
-
CHAIN_D_4(3QO6)
DEGP1_ARATH
[Raw transfer]
-
CHAIN_D_4(3QO6)
DEGP1_ARATH
[Raw transfer]
-
4 PsiBlast_PDB 90.0342% -81 - C2 -3OTP - DEGP_ECOLI -
21 PsiBlast_CBE 87.5837% -88 - C2 -3PV3 5.5 ?
10 PsiBlast_PDB 87.5038% -85 - C2 -3PV2 - ? -
7 PsiBlast_PDB 86.7442% -67 - C2 -3OU0 4.0 DEGP_ECOLI
8 PsiBlast_PDB 86.3042% -62 - C2 -3MH7 4.2 DEGP_ECOLI
63 HHSearch 86.0639% -80 - C2 -3PV2 - ? -
23 PsiBlast_CBE 85.9237% -81 - C2 -3PV3 5.6 ?
11 PsiBlast_PDB 85.7437% -79 - C2 -3PV3 4.3 ?
5 PsiBlast_PDB 85.6442% -62 - C2 -3CS0 - DEGP_ECOLI -
1 PsiBlast_PDB 85.5943% -62 - C2 -3MH6 3.6 DEGP_ECOLI
9 PsiBlast_PDB 84.2437% -75 - C2 -4YNN - ? -
86 Fugue 84.1839% -75 - C2 -3PV2 - ? -
22 PsiBlast_CBE 83.9137% -77 - C2 -3PV3 3.7 ?
64 HHSearch 80.3842% -81 - C2 -3STJ 4.7 DEGQ_ECOLI
2 PsiBlast_PDB 76.9743% -63 - C2 -2ZLE - DEGP_ECOLI -
16 PsiBlast_PDB 76.8938% -80 - C2 -4IC6 - DEGP8_ARATH -
65 HHSearch 75.0740% -80 - C2 -1TE0 - DEGS_ECOLI -
3 PsiBlast_PDB 74.8242% -87 - C2 -3MH4 - DEGP_ECOLI -
90 Fugue 74.0923% -49 - C2 -4FLN - DEGP2_ARATH -
12 PsiBlast_PDB 72.8242% -88 - C2 -1TE0 - DEGS_ECOLI -
26 PsiBlast_CBE 71.6439% -73 - C2 -3QO6 Error DEGP1_ARATH
25 PsiBlast_CBE 71.1139% -74 - C2 -3QO6 4.5 DEGP1_ARATH
14 PsiBlast_PDB 70.9239% -77 - C2 -3QO6 3.3 DEGP1_ARATH
68 HHSearch 70.3936% -70 - C2 -3QO6 3.7 DEGP1_ARATH
34 PsiBlast_CBE 56.0639% -86 - C2 -3TJO 4.6 HTRA1_HUMAN
31 PsiBlast_CBE 54.4533% -77 - C2 -3NZI 5.9 HTRA1_HUMAN