@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : jhp_0427: (2015-12-15 )
MIKARFKKRLLGSRGAFDLNIDLEIKEAEVVALLGESGAGKSTILRILAGLEAVSSGYIEANHSVWLDTQKKIFLKPQQRKIGFVFQDYALFPHLNVYQNIAFAHPKDKNKIHEVLRLMRLENLSQQKIPKLSGGQAQRVALARALIAAKNLLLLDEPLNALDNALKNEVQQGLLDFIKRENLSVLLVSHDPNEITKLARTFLFLNNGVIDPNQENRLFSNRLLVKPLFEDENYCHYEVIPQTISLPKDCLNPTFKLDFIQNKKF

Atome Classification :

(24 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_B_6(1L2T)
Y796_METJA
[Raw transfer]



ATP_A_5(1L2T)
Y796_METJA
[Raw transfer]



ADP_A_3(3TIF)
Y796_METJA
[Raw transfer]



ADP_B_8(3TIF)
Y796_METJA
[Raw transfer]



BME_A_2(3NH6)

[Raw transfer]
124 Fugue 83.0731%-101 - C1 -1OXS - ? -
123 Fugue 80.8433%-102 - C1 -1Z47 - ? -
109 HHSearch 72.8035%-113 - C1 -3RLF - MALK_ECOLI -
21 PsiBlast_CBE 72.6939%-128 - C1 -1Z47 - ? -
126 Fugue 71.6926% -95 - C1 -3TUZ - METN_ECOLI -
11 PsiBlast_PDB 71.5938%-128 - C1 -3PV0 - MALK_ECOLI -
19 PsiBlast_PDB 70.8738%-133 - C1 -2D62 - ? -
27 PsiBlast_CBE 70.8338%-134 - C1 -3PUX - MALK_ECOLI -
86 PsiBlast_CBE 70.8234%-136 - C1 -3FVQ - FBPC_NEIG1 -
10 PsiBlast_PDB 70.7138%-131 - C1 -3PUZ - MALK_ECOLI -
13 PsiBlast_PDB 70.6538%-131 - C1 -3PUW - MALK_ECOLI -
12 PsiBlast_PDB 70.5638%-130 - C1 -3PUV - MALK_ECOLI -
25 PsiBlast_CBE 70.5538%-132 - C1 -3PUZ - MALK_ECOLI -
101 HHSearch 70.4536%-105 - C1 -1Z47 - ? -
18 PsiBlast_PDB 69.8638%-129 - C1 -4KI0 - ? -
110 HHSearch 69.7229%-103 - C1 -3TUI - METN_ECOLI -
29 PsiBlast_CBE 69.6138%-131 - C1 -3PUV - MALK_ECOLI -
9 PsiBlast_PDB 69.6038%-130 - C1 -3PUY - MALK_ECOLI -
106 HHSearch 69.4832%-115 - C1 -3FVQ - FBPC_NEIG1 -
28 PsiBlast_CBE 69.4838%-133 - C1 -3PUW - MALK_ECOLI -
54 PsiBlast_CBE 64.4631%-100 - C1 -1L2T 4.3 Y796_METJA
55 PsiBlast_CBE 64.2031%-103 - C1 -3TIF 4.2 Y796_METJA
56 PsiBlast_CBE 63.4131%-101 - C1 -3TIF 4.0 Y796_METJA
53 PsiBlast_CBE 61.8331% -99 - C1 -1L2T 4.6 Y796_METJA