@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : jhp_0453: (2015-12-15 )
MQNYQSHSIKVLKGLEGVRKRPGMYIGDTNVGGLHHMVYEVVDNAVDESMAGFCDTINITLTEEGSCIVEDNGRGIPVDIHPTEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSVVNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKESGTTIEFFPDESVMEVVEFQAGILQKRFKEMAYLNDGLKISFKEEKTQLQETYFYKDGLKQFVKDSAKKELLTPIIAFKSMDEETRTSIEVALAYADDYNENTLSFVNNIKTSEGGTHEAGFKMGLSKAILQYIDNNIKTKESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLGSSYARALVSKLVYDKIHQFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVGTLPGKLADCQSKDPLESEIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMITAFGCGIQESFDIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVFIAQAPLYKYKKGKTEIYLKDSVALDHFLIEHGINSVDIEGIGKNDLMNLLKVARHYRYTLLELEKRYNLLEVLRFLIETKDALSLDMKVLEKSILEKLEGLNYQILRSFATEESLHLHAQTPKGLVEFNLDDNLFKDVLFEEAHYTYQKLMEYNLDFLENKDILAFLEEVENYAKKGANIQRYKGLGEMNPNDLWETTMHKENRSLIKLKIEDLEKTDAVFSLCMGDEVEPRRAFIQAHAKDVKQLDV

Atome Classification :

(63 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_A_7(1S16)
PARE_ECOLI
[Raw transfer]




ANP_A_6(1EI1)
GYRB_ECOLI
[Raw transfer]




ANP_A_7(1S16)
PARE_ECOLI
[Raw transfer]




DOO_A_5(4KQV)
?
[Raw transfer]




ANP_A_6(1EI1)
GYRB_ECOLI
[Raw transfer]




DOO_B_7(4KFG)
GYRB_ECOLI
[Raw transfer]




DOO_A_5(4KFG)
GYRB_ECOLI
[Raw transfer]




DOO_B_12(4KQV)
?
[Raw transfer]




ANP_B_8(1S16)
PARE_ECOLI
[Raw transfer]




B46_A_2(3G7E)
GYRB_ECOLI
[Raw transfer]




ANP_B_7(1EI1)
GYRB_ECOLI
[Raw transfer]




RLI_A_3(4DUH)
GYRB_ECOLI
[Raw transfer]




XAM_C_7(4URM)
?
[Raw transfer]




19X_B_4(4HY1)
?
[Raw transfer]




RLI_B_4(4DUH)
GYRB_ECOLI
[Raw transfer]




CJC_A_3(4HYM)
?
[Raw transfer]




NOV_A_3(1KIJ)
?
[Raw transfer]




1A1_D_11(4HYP)
GYRB_ECOLI
[Raw transfer]




XAM_B_6(4URM)
?
[Raw transfer]




1A1_C_9(4HYP)
GYRB_ECOLI
[Raw transfer]




1YP_A_2(4LPB)
?
[Raw transfer]




2B7_A_2(4MOT)
?
[Raw transfer]




NOV_C_7(4URO)
GYRB_STAAU
[Raw transfer]




XAM_A_5(4URM)
?
[Raw transfer]




B5U_B_5(4B6C)
GYRB_MYCSM
[Raw transfer]




28G_A_2(4MBC)
?
[Raw transfer]




1A1_B_7(4HYP)
GYRB_ECOLI
[Raw transfer]




1A1_A_5(4HYP)
GYRB_ECOLI
[Raw transfer]




NOV_B_2(1AJ6)
GYRB_ECOLI
[Raw transfer]




RWX_B_8(4BAE)
GYRB_MYCSM
[Raw transfer]




28F_A_3(4MB9)
?
[Raw transfer]




NOV_B_6(4URO)
GYRB_STAAU
[Raw transfer]




XAM_D_8(4URM)
?
[Raw transfer]




NOV_C_6(4URN)
?
[Raw transfer]




0RA_A_2(4EM7)
?
[Raw transfer]




TTJ_A_2(5BOD)
?
[Raw transfer]




NOV_A_4(4URN)
?
[Raw transfer]




NOV_D_8(4URO)
GYRB_STAAU
[Raw transfer]




NOV_A_5(4URO)
GYRB_STAAU
[Raw transfer]




NOV_B_5(4URN)
?
[Raw transfer]




087_A_3(3U2K)
GYRB_STAAU
[Raw transfer]




19Y_A_3(4HXZ)
?
[Raw transfer]




08B_B_6(3U2D)
GYRB_STAAU
[Raw transfer]




087_B_7(3U2K)
GYRB_STAAU
[Raw transfer]




1AV_A_3(4HZ0)
PARE_ECOLI
[Raw transfer]




1AV_B_5(4HZ0)
PARE_ECOLI
[Raw transfer]




27 PsiBlast_CBE 87.4942% -65 - C2 -3ZKD - GYRB_MYCTU -
6 PsiBlast_PDB 87.2242% -65 - C2 -3ZKD - GYRB_MYCTU -
25 PsiBlast_CBE 86.9042% -70 - C2 -3ZKD - GYRB_MYCTU -
24 PsiBlast_CBE 86.5442% -73 - C2 -3ZKD - GYRB_MYCTU -
42 PsiBlast_CBE 86.5142% -66 - C2 -3ZKB - GYRB_MYCTU -
28 PsiBlast_CBE 86.1842% -64 - C2 -3ZKD - GYRB_MYCTU -
23 PsiBlast_CBE 85.9742% -64 - C2 -3ZKD - GYRB_MYCTU -
26 PsiBlast_CBE 85.8342% -65 - C2 -3ZKD - GYRB_MYCTU -
112 Fugue 85.7645% -59 - C2 -1EI1 7.8 GYRB_ECOLI
113 Fugue 85.7545% -59 - C2 -1EI1 7.8 GYRB_ECOLI
5 PsiBlast_PDB 85.7242% -68 - C2 -3ZKB - GYRB_MYCTU -
1 PsiBlast_PDB 85.5146% -64 - C2 -4WUB - GYRB_ECOLI -
41 PsiBlast_CBE 85.0542% -66 - C2 -3ZKB - GYRB_MYCTU -
21 PsiBlast_CBE 84.8942% -72 - C2 -3ZM7 - GYRB_MYCTU -
29 PsiBlast_CBE 84.8042% -66 - C2 -3ZKD - GYRB_MYCTU -
126 HHSearch 84.6644% -63 - C2 -1KIJ 6.6 ?
40 PsiBlast_CBE 84.3442% -66 - C2 -3ZKB - GYRB_MYCTU -
3 PsiBlast_PDB 84.2946% -64 - C2 -4WUD - GYRB_ECOLI -
2 PsiBlast_PDB 84.2946% -64 - C2 -4WUC - GYRB_ECOLI -
22 PsiBlast_CBE 84.0142% -74 - C2 -3ZM7 - GYRB_MYCTU -
43 PsiBlast_CBE 80.7545% -58 - C2 -1EI1 8.3 GYRB_ECOLI
16 PsiBlast_PDB 79.0939% -70 - C2 -4HYM 6.9 ?
45 PsiBlast_CBE 78.1238% -54 - C2 -1S16 10.1 PARE_ECOLI
15 PsiBlast_PDB 77.4039% -74 - C2 -4HXZ 5.2 ?
13 PsiBlast_PDB 77.1938% -55 - C2 -1S16 9.9 PARE_ECOLI
127 HHSearch 76.8238% -59 - C2 -1S16 9.9 PARE_ECOLI
17 PsiBlast_PDB 76.7739% -74 - C2 -4KQV 6.2 ?
18 PsiBlast_PDB 62.3652% -61 - C2 -4DUH 5.9 GYRB_ECOLI
54 PsiBlast_CBE 62.0852% -57 - C2 -3G7E 6.2 GYRB_ECOLI
19 PsiBlast_PDB 61.6252% -67 - C2 -1AJ6 5.3 GYRB_ECOLI
48 PsiBlast_CBE 61.3552% -63 - C2 -4DUH 6.1 GYRB_ECOLI
51 PsiBlast_CBE 60.9251% -71 - C2 -4HYP 7.2 GYRB_ECOLI
20 PsiBlast_PDB 60.4151% -71 - C2 -4HYP 6.9 GYRB_ECOLI
49 PsiBlast_CBE 60.3251% -64 - C2 -4KFG 7.4 GYRB_ECOLI
52 PsiBlast_CBE 60.2551% -68 - C2 -4HYP 7.0 GYRB_ECOLI
103 PsiBlast_CBE 59.9546% -64 - C2 -4URM 9.2 ?
50 PsiBlast_CBE 59.6851% -66 - C2 -4KFG 7.2 GYRB_ECOLI
99 PsiBlast_CBE 59.3346% -58 - C2 -4URO 5.5 GYRB_STAAU
53 PsiBlast_CBE 59.2851% -66 - C2 -4HYP 6.9 GYRB_ECOLI
64 PsiBlast_CBE 59.0245% -70 - C2 -4LPB 6.2 ?
47 PsiBlast_CBE 59.0039% -68 - C2 -4HY1 5.9 ?
61 PsiBlast_CBE 58.6645% -70 - C2 -4MOT 5.1 ?
89 PsiBlast_CBE 58.5147% -58 - C2 -4URN 3.2 ?
66 PsiBlast_CBE 58.4650% -74 - C2 -4BAE 6.8 GYRB_MYCSM
97 PsiBlast_CBE 58.3946% -59 - C2 -4URO 5.4 GYRB_STAAU
91 PsiBlast_CBE 58.1747% -65 - C2 -4URN 4.7 ?
60 PsiBlast_CBE 58.1645% -72 - C2 -5BOD 5.1 ?
102 PsiBlast_CBE 58.1546% -66 - C2 -4URM 9.1 ?
100 PsiBlast_CBE 58.1246% -61 - C2 -4URM 8.7 ?
63 PsiBlast_CBE 58.0045% -70 - C2 -4MB9 5.7 ?
98 PsiBlast_CBE 57.9646% -55 - C2 -4URO 5.7 GYRB_STAAU
65 PsiBlast_CBE 57.8645% -70 - C2 -4EM7 4.2 ?
62 PsiBlast_CBE 57.7145% -69 - C2 -4MBC 5.1 ?
101 PsiBlast_CBE 57.6746% -66 - C2 -4URM 7.6 ?
96 PsiBlast_CBE 57.5046% -63 - C2 -4URO 5.4 GYRB_STAAU
93 PsiBlast_CBE 56.2144% -51 - C2 -4HZ0 4.9 PARE_ECOLI
92 PsiBlast_CBE 55.9044% -52 - C2 -4HZ0 5.1 PARE_ECOLI
46 PsiBlast_CBE 55.6239% -67 - C2 -4KQV 6.5 ?
90 PsiBlast_CBE 54.6747% -49 - C2 -4URN 4.6 ?
110 PsiBlast_CBE 54.5538% -51 - C2 -3U2K 6.3 GYRB_STAAU
111 PsiBlast_CBE 53.8338% -57 - C2 -3U2D 5.6 GYRB_STAAU
109 PsiBlast_CBE 52.9738% -57 - C2 -3U2K 6.5 GYRB_STAAU
108 PsiBlast_CBE 51.1441% -59 - C2 -4B6C 6.4 GYRB_MYCSM