@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : jhp_0460: (2015-12-15 )
MKVGVYGASGRIGKLLLEELKGGYKGLELSSVFVRQKCETDFSSFSHAPLVTNDLKAFVKACECVVDFSLPKGVDHLLDVLLECPKILVSGTTGLEKETLEKMQKLALKAPLLHAHNMSIGIMMLNQLAFLTSLKLKDADIEIVETHHNLKKDAPSGTALSLYETCTKARGYDEKNALITHREGLRSKESIGIATLRGGDVAGKHTIGFYLEGEYIELSHTATNRSIFAKGALEVALWLKDKAAKKYEISEMFG

Atome Classification :

(24 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAD_D_20(1VM6)
DAPB_THEMA
[Raw transfer]



NAD_A_17(1VM6)
DAPB_THEMA
[Raw transfer]



NAD_B_18(1VM6)
DAPB_THEMA
[Raw transfer]



NAP_A_5(3IJP)
DAPB_BARHE
[Raw transfer]



NAD_A_17(1VM6)
DAPB_THEMA
[Raw transfer]



NAD_B_7(4YWJ)
DAPB_PSEAE
[Raw transfer]



NAD_B_8(1ARZ)
DAPB_ECOLI
[Raw transfer]



PDC_C_11(1ARZ)
DAPB_ECOLI
[Raw transfer]



PDC_D_13(1ARZ)
DAPB_ECOLI
[Raw transfer]



GOL_B_18(3QY9)
DAPB_STAAC
[Raw transfer]



PG4_C_22(1VM6)
DAPB_THEMA
[Raw transfer]



PGE_A_4(4YWJ)
DAPB_PSEAE
[Raw transfer]
22 PsiBlast_CBE 95.6035%-103 - C3 -3IJP - DAPB_BARHE -
2 PsiBlast_PDB 94.5135% -99 - C3 -3IJP 12.0 DAPB_BARHE
5 PsiBlast_PDB 90.9531%-110 - C3 -1DIH - DAPB_ECOLI -
6 PsiBlast_PDB 90.2431%-103 - C3 -1DRU - DAPB_ECOLI -
8 PsiBlast_PDB 89.9131%-104 - C3 -1DRW - DAPB_ECOLI -
7 PsiBlast_PDB 89.3831% -99 - C3 -1DRV - DAPB_ECOLI -
1 PsiBlast_PDB 88.4634% -96 - C3 -4YWJ 1.7 DAPB_PSEAE
21 PsiBlast_CBE 88.2534% -96 - C3 -4YWJ 9.4 DAPB_PSEAE
35 HHSearch 88.1631%-107 - C3 -1DIH - DAPB_ECOLI -
4 PsiBlast_PDB 87.9431%-100 - C3 -1ARZ - DAPB_ECOLI -
26 PsiBlast_CBE 87.7031% -99 - C3 -1ARZ 8.1 DAPB_ECOLI
25 PsiBlast_CBE 87.6031% -99 - C3 -1ARZ 3.5 DAPB_ECOLI
33 HHSearch 87.2338%-115 - C3 -1VM6 11.2 DAPB_THEMA
24 PsiBlast_CBE 86.8331% -98 - C3 -1ARZ 4.6 DAPB_ECOLI
3 PsiBlast_PDB 84.6531% -94 - C3 -4F3Y - DAPB_BURTA -
10 PsiBlast_PDB 82.9332% -88 - C3 -3QY9 - DAPB_STAAC -
23 PsiBlast_CBE 82.0631% -96 - C3 -4F3Y - DAPB_BURTA -
30 PsiBlast_CBE 81.1232% -88 - C3 -3QY9 - DAPB_STAAC -
28 PsiBlast_CBE 81.0333%-110 - C3 -1VM6 2.2 DAPB_THEMA
31 PsiBlast_CBE 80.8632% -90 - C3 -3QY9 - DAPB_STAAC -
29 PsiBlast_CBE 80.2333%-106 - C3 -1VM6 11.6 DAPB_THEMA
32 PsiBlast_CBE 80.0432% -85 - C3 -3QY9 2.9 DAPB_STAAC
9 PsiBlast_PDB 79.5133%-105 - C3 -1VM6 11.7 DAPB_THEMA
27 PsiBlast_CBE 79.0333%-104 - C3 -1VM6 11.8 DAPB_THEMA