@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : jhp_0466: (2015-12-15 )
MKTKAGFVALIGKPNAGKSTLLNTLLNAHLALVSHKANATRKLMKCIVPFKDKEGYESQIIFLDTPGLHHQEKLLNQCMLSQALKAMGDAELRVFLASVHDDLKGYEEFLSLCQKPHILALSKIDTATHKQVLQKLQEYQKYSSQFLALVPLSAKKSQNLNALLECISKHLSPSAWLFEKDLMSDEKMRDIYKEIIRESLFDFLSDEIPYESDVMIDKFIEEERIDKVYARIIVEKESQKKIVIGKNGVNIKRIGTNARLKMQEVGEKKVFLNLQVIAQKSWSKEEKSLQKLGYIYQRNRD

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GNP_A_4(3R9W)
ERA_AQUAE
[Raw transfer]




GNP_A_4(3IEV)
ERA_AQUAE
[Raw transfer]




GNP_A_4(3IEV)
ERA_AQUAE
[Raw transfer]




GNP_A_5(3R9X)
ERA_AQUAE
[Raw transfer]




GNP_A_3(1WF3)
ERA_THET8
[Raw transfer]




GNP_A_3(1WF3)
ERA_THET8
[Raw transfer]




GDP_A_4(2WJG)
FEOB_METJA
[Raw transfer]




3 PsiBlast_PDB 79.9337% -97 - C1 -3IEU - ERA_ECOLI -
61 HHSearch 79.9039%-102 - C1 -1EGA - ERA_ECOLI -
21 PsiBlast_CBE 79.6137% -98 - C1 -3IEU - ERA_ECOLI -
5 PsiBlast_PDB 78.7932% -94 - C1 -3R9W 10.4 ERA_AQUAE
1 PsiBlast_PDB 78.7737%-101 - C1 -1EGA - ERA_ECOLI -
7 PsiBlast_PDB 78.6732% -93 - C1 -3IEV 10.6 ERA_AQUAE
22 PsiBlast_CBE 78.6237% -98 - C1 -1EGA - ERA_ECOLI -
6 PsiBlast_PDB 78.5832% -93 - C1 -3R9X 10.0 ERA_AQUAE
63 HHSearch 76.9833% -87 - C1 -3IEV 10.7 ERA_AQUAE
62 HHSearch 73.0532% -80 - C1 -1WF3 10.3 ERA_THET8
8 PsiBlast_PDB 67.9931% -63 - C1 -1WF3 9.0 ERA_THET8
2 PsiBlast_PDB 59.5637% 120 - C- -1X1L - ERA_THET8 -
15 PsiBlast_PDB 59.3928%-114 - C1 -3PR1 - ENGB_THEMA -
52 Fugue 58.8233%-112 - C1 -1EGA - ERA_ECOLI -
14 PsiBlast_PDB 58.8128%-106 - C1 -3PQC - ENGB_THEMA -
9 PsiBlast_PDB 58.6530%-109 - C1 -2DYK - ? -
4 PsiBlast_PDB 58.2837% 132 - C- -1X18 - ERA_THET8 -
19 PsiBlast_PDB 58.0730%-115 - C1 -2E87 - ? -
54 Fugue 57.1117% -46 - C1 -1KK1 - IF2G_PYRAB -
80 HHSearch 56.8030% -97 - C1 -2DYK - ? -