@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : jhp_0547: (2015-12-16 )
MDTIKSIPIRTFILLYKSSPKCVVLASITVLFVGILPSLNILVMIKLIDIVVNLLQKHTHFEYSLLLPTLLLWGALLFLTHVFSGILSSLQTIIAEQFSINIITQLANKLTQVKNLNFFENKDHTIKLNTIHNGLHIRPLNYVSNLFFNLQRIIGLISLFGILFSISIYLPFIMIFATVPCILISNHIAKKHSASIDKLQDQKESMQNYLYSGLDNQKNKDNLLFNFMLNFHHKFIETKELYLNNFVKVAQKNLIFTIYADVLITTLSIALFFLMVFIILSKLIGVGAIAGYIQAFSSTQQQLQDLSFYGKWFFAINKYFENYFCILDYKIPKPETQIKLEEKIHSITFENISFSYPNSKLIFENFNLSLHSNKIYALVGKNASGKSTLINLLLGFYTPNSGQIIINNKYPLQDLELNSYHQQMSAIFQDFSLYAGYSIDDNLFMQNNITKEQLKQKREILKSFDENFQNCLNDCNNTLFGAQYNGVDFSLGQKQRIATMRAFLKPSNCIVLDEPSSAIDPIMEKEFLDFIFKKSQSKMALIITHRMNSVKQANEIIVLDQGKLIEQGNFETLMKKQGLFCELFLKQQY

Atome Classification :

(29 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ACP_A_4(4AYT)
ABCBA_HUMAN
[Raw transfer]



ATP_A_3(2IXE)
TAP1_RAT
[Raw transfer]



ATP_E_5(2FGK)
HLYBP_ECOLX
[Raw transfer]



ATP_H_8(2FGK)

[Raw transfer]



ATP_F_6(2FGK)
HLYBP_ECOLX
[Raw transfer]



ATP_G_7(2FGK)
HLYBP_ECOLX
[Raw transfer]



ACP_A_4(4AYX)
ABCBA_HUMAN
[Raw transfer]



ATP_E_5(2FGJ)
HLYBP_ECOLX
[Raw transfer]



ATP_A_9(1XEF)
HLYBP_ECOLX
[Raw transfer]



128_A_2(2PMK)

[Raw transfer]



ATP_H_8(2FGJ)

[Raw transfer]



ANP_A_2(4AYW)
ABCBA_HUMAN
[Raw transfer]



ATP_G_7(2FGJ)
HLYBP_ECOLX
[Raw transfer]
18 PsiBlast_PDB 81.1023% -96 - C2 -3WMG - ? -
1 PsiBlast_PDB 81.0025%-109 - C2 -3QF4 - Y288_THEMA -
17 PsiBlast_PDB 79.8223% -94 - C2 -3WMF - ? -
2 PsiBlast_PDB 79.4025%-107 - C2 -4Q4A - Y288_THEMA -
19 PsiBlast_PDB 78.8923% -99 - C2 -3WME - ? -
3 PsiBlast_PDB 78.5325%-101 - C2 -4Q4H - Y288_THEMA -
4 PsiBlast_PDB 76.9625%-102 - C2 -4Q4J - Y288_THEMA -
44 HHSearch 74.8622% -95 - C2 -3B60 - MSBA_SALTY -
47 HHSearch 73.5519%-101 - C2 -3WMG - ? -
46 HHSearch 72.7622%-100 - C2 -3ZDQ - ABCBA_HUMAN -
65 Fugue 70.5520% -98 - C2 -3B60 - MSBA_SALTY -
71 Fugue 70.4521%-111 - C2 -4F4C - PGP1_CAEEL -
26 PsiBlast_CBE 66.3634% -83 - C2 -2FGJ 7.0 HLYBP_ECOLX
27 PsiBlast_CBE 65.0934% -83 - C2 -2FGJ - HLYBP_ECOLX -
13 PsiBlast_PDB 64.2034% -95 - C2 -1MT0 - -
25 PsiBlast_CBE 64.1134% -87 - C2 -2FGJ 6.7
10 PsiBlast_PDB 63.7934% -83 - C2 -3B5J - -
31 PsiBlast_CBE 63.6034% -86 - C2 -1XEF - HLYBP_ECOLX -
9 PsiBlast_PDB 63.5534% -86 - C2 -2PMK 7.2
32 PsiBlast_CBE 62.9234% -84 - C2 -1XEF - HLYBP_ECOLX -
20 PsiBlast_PDB 62.6434% -81 - C2 -1XEF 6.5 HLYBP_ECOLX
28 PsiBlast_CBE 62.0534% -89 - C2 -2FGJ 6.8 HLYBP_ECOLX
33 PsiBlast_CBE 61.8634% -84 - C2 -4AYX 5.8 ABCBA_HUMAN
22 PsiBlast_CBE 61.4734% -82 - C2 -2FGK 7.3
24 PsiBlast_CBE 60.9134% -82 - C2 -2FGK 7.2 HLYBP_ECOLX
23 PsiBlast_CBE 59.7234% -84 - C2 -2FGK 6.8 HLYBP_ECOLX
34 PsiBlast_CBE 58.6934% -83 - C2 -4AYT 6.2 ABCBA_HUMAN
16 PsiBlast_PDB 57.8934% -85 - C2 -2FGK 7.5 HLYBP_ECOLX
36 PsiBlast_CBE 56.1833% -91 - C2 -4AYW 5.7 ABCBA_HUMAN