@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : jhp_0561: (2015-12-16 )
MKQLFLIIGAPGSGKTTDAELIAKNNSETIAHFSTGDLLRAESAKKTERGLLIEKFTSQGELVPLEIVVETILSAIKSSSKGIILIDGYPRSVEQMQALDKELNAQNEVILKSVIEVEVSENTAKERVLGRSRGADDNERVFHNRMRVFLDPLVEIQNFYKAKHLHKIINGERSIEEIVNEMQKYILSFAN

Atome Classification :

(25 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ADP_A_3(2CDN)
KAD_MYCTU
[Raw transfer]



ADP_A_4(4JLP)
KAD_AQUAE
[Raw transfer]



ADP_B_9(3TLX)
?
[Raw transfer]



AP5_A_15(1Z83)
KAD1_HUMAN
[Raw transfer]



B4P_A_3(2C95)
KAD1_HUMAN
[Raw transfer]



AMP_A_10(3TLX)
?
[Raw transfer]



AMP_A_10(3TLX)
?
[Raw transfer]



AMP_B_12(2BWJ)
KAD5_HUMAN
[Raw transfer]



EPE_A_3(4W5H)
KAD_STRP2
[Raw transfer]



AMP_C_14(2BWJ)
KAD5_HUMAN
[Raw transfer]



AMP_F_21(2BWJ)

[Raw transfer]
100 HHSearch 89.7231%-102 - C1 -3UMF - ? -
12 PsiBlast_PDB 89.6032% -96 - C1 -3UMF - ? -
26 PsiBlast_CBE 88.8033% -96 - C1 -2BWJ - KAD5_HUMAN -
6 PsiBlast_PDB 88.0633% -94 - C1 -2BWJ - KAD5_HUMAN -
29 PsiBlast_CBE 88.0533% -95 - C1 -2BWJ 5.0 KAD5_HUMAN
25 PsiBlast_CBE 87.6233% -96 - C1 -2BWJ 3.9
101 HHSearch 87.5230% -84 - C1 -2XB4 - ? -
94 HHSearch 87.1133% -84 - C1 -3TLX 5.7 ?
5 PsiBlast_PDB 87.0931% -81 - C1 -4W5H 2.3 KAD_STRP2
27 PsiBlast_CBE 85.8733% -96 - C1 -2BWJ - KAD5_HUMAN -
28 PsiBlast_CBE 85.8133% -92 - C1 -2BWJ 3.5 KAD5_HUMAN
104 HHSearch 85.0428% -97 - C1 -1ZD8 - KAD3_HUMAN -
99 HHSearch 85.0029% -94 - C1 -1UKZ - KCY_YEAST -
98 HHSearch 84.7032% -94 - C1 -2BWJ - KAD5_HUMAN -
4 PsiBlast_PDB 84.6531% -76 - C1 -4NTZ - KAD_STRP2 -
20 PsiBlast_PDB 84.5627% -93 - C1 -2RH5 - KAD_AQUAE -
24 PsiBlast_CBE 84.4731% -75 - C1 -4NU0 - KAD_STRP2 -
93 HHSearch 84.1228% -93 - C1 -2C95 - KAD1_HUMAN -
23 PsiBlast_CBE 84.0931% -79 - C1 -4W5J - KAD_STRP2 -
92 HHSearch 84.0332% -87 * C1 *3BE4 - ? -
2 PsiBlast_PDB 82.9430% -81 - C1 -1Z83 13.0 KAD1_HUMAN
3 PsiBlast_PDB 82.8730% -81 - C1 -2C95 12.7 KAD1_HUMAN
30 PsiBlast_CBE 82.3531% -83 - C1 -3TLX 7.3 ?
14 PsiBlast_PDB 80.8431% -80 - C1 -3TLX 5.7 ?
106 HHSearch 78.4031% -74 - C1 -2CDN 9.0 KAD_MYCTU