@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : jhp_0575: (2015-12-16 )
MSKKIVVDPITRIEGHLRIEVIVDDDNVITDAFSSSTLFRGLETIIKGRDPRDAGFIAQRICGVCTYSHYKAGVTAVENALGITPPLNAQLVRSLMNMALLFHDHVVHFYTLHGLDWCDILSTLKADPIQAAKLSFKYSPYPINTGAGELKAVQKRLNDFAKSGSLGPFSNGYYGHKTYRLNPEQNLIVLSHYLKLLEIQREAAKMTAIFGAKQPHPQSLTVGGVTSVMDILDPTRLAEWKSKFEVVANFINHAYYPDLVMAGEMFANEPSVIKGCGLRNFIAYEEVLLGKDKYLLSSGVVLDGDISKLHPIDESLIKEEVTHSWYQYEDTKEVQLHPYDGQTNPHYTGLKDGESVGIENKIIPAKVLDTKDKYSWIKSPRYDSKPMEVGPLSSVVVGLAAKNPYVTEVATKFLKDTKLPLEALFSTLGRTAARCIEAKTIADNGLLAFDALVENLKSDQSTCAPYHIDKNQEYKGRYIGQVPRGMLSHWVRIKNGVVENYQAVVPSTWNAGPRDSKNQRGAYEMSLIGTKIADLTQPLEIIRTIHSFDPCIACSVHVMDFKGQSLNEFKVEPNFAKF

Atome Classification :

(41 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

FNE_L_7(1UBH)
PHNL_DESVM
[Raw transfer]




FNE_L_7(1UBJ)
PHNL_DESVM
[Raw transfer]




NFO_L_7(1WUJ)
PHNL_DESVM
[Raw transfer]




FNE_L_7(1UBR)
PHNL_DESVM
[Raw transfer]




FNE_L_7(1UBO)
PHNL_DESVM
[Raw transfer]




FNE_L_7(1UBT)
PHNL_DESVM
[Raw transfer]




FNE_L_7(1UBL)
PHNL_DESVM
[Raw transfer]




FNE_L_7(1UBK)
PHNL_DESVM
[Raw transfer]




NFO_L_7(1WUK)
PHNL_DESVM
[Raw transfer]




NFE_L_7(1H2A)
PHNL_DESVM
[Raw transfer]




NFE_L_7(1H2R)
PHNL_DESVM
[Raw transfer]




NFR_L_7(1WUL)
PHNL_DESVM
[Raw transfer]




FNE_L_7(1UBM)
PHNL_DESVM
[Raw transfer]




FNE_L_7(1UBU)
PHNL_DESVM
[Raw transfer]




NFC_L_7(1WUH)
PHNL_DESVM
[Raw transfer]




NFV_L_3(4IUB)
MBHL_CUPNH
[Raw transfer]




NFE_L_7(1H2A)
PHNL_DESVM
[Raw transfer]




NFC_L_7(1WUI)
PHNL_DESVM
[Raw transfer]




NFV_L_3(4TTT)
MBHL_CUPNH
[Raw transfer]




NFV_L_3(4IUC)
MBHL_CUPNH
[Raw transfer]




NFU_L_3(3RGW)
MBHL_CUPNH
[Raw transfer]




CMO_L_8(1UBK)
PHNL_DESVM
[Raw transfer]




CMO_L_8(1UBO)
PHNL_DESVM
[Raw transfer]




21 PsiBlast_CBE 94.2745% -73 - C5 -3MYR - ? -
22 PsiBlast_CBE 93.8945% -75 - C5 -3MYR - ? -
23 PsiBlast_CBE 93.6345% -77 - C5 -3MYR - ? -
1 PsiBlast_PDB 93.5845% -75 - C5 -3MYR - ? -
113 HHSearch 92.7548% -70 - C5 -3MYR - ? -
30 PsiBlast_CBE 91.7541% -68 - C5 -4GD3 - MBHL_ECOLI -
31 PsiBlast_CBE 91.4941% -67 - C5 -4GD3 - MBHL_ECOLI -
39 PsiBlast_CBE 91.4541% -68 - C5 -3UQY - MBHL_ECOLI -
36 PsiBlast_CBE 91.4141% -68 - C5 -3USC - MBHL_ECOLI -
37 PsiBlast_CBE 91.3641% -69 - C5 -3USC - MBHL_ECOLI -
41 PsiBlast_CBE 91.3241% -67 - C5 -4UE3 - MBHL_ECOLI -
35 PsiBlast_CBE 91.1841% -68 - C5 -3USE - MBHL_ECOLI -
25 PsiBlast_CBE 91.1643% -77 - C5 -4C3O - ? -
38 PsiBlast_CBE 91.0841% -68 - C5 -3UQY - MBHL_ECOLI -
24 PsiBlast_CBE 91.0843% -76 - C5 -4C3O - ? -
40 PsiBlast_CBE 91.0241% -68 - C5 -4UE3 - MBHL_ECOLI -
32 PsiBlast_CBE 90.9441% -68 - C5 -4GD3 - MBHL_ECOLI -
34 PsiBlast_CBE 90.6741% -68 - C5 -3USE - MBHL_ECOLI -
3 PsiBlast_PDB 90.3943% -76 - C5 -4C3O - ? -
68 PsiBlast_CBE 90.2643% -75 - C5 -4UCW - ? -
16 PsiBlast_PDB 89.8146% -78 - C5 -1WUJ 3.4 PHNL_DESVM
11 PsiBlast_PDB 89.8046% -76 - C5 -1UBO 3.5 PHNL_DESVM
8 PsiBlast_PDB 89.6546% -76 - C5 -1UBK 3.3 PHNL_DESVM
102 Fugue 89.4847% -84 - C5 -1H2A 3.0 PHNL_DESVM
9 PsiBlast_PDB 89.4646% -78 - C5 -1UBL 3.3 PHNL_DESVM
18 PsiBlast_PDB 89.4346% -76 - C5 -1WUL 3.5 PHNL_DESVM
7 PsiBlast_PDB 89.3446% -77 - C5 -1UBJ 3.5 PHNL_DESVM
17 PsiBlast_PDB 89.3246% -78 - C5 -1WUK 3.4 PHNL_DESVM
12 PsiBlast_PDB 89.3046% -75 - C5 -1UBR 3.5 PHNL_DESVM
6 PsiBlast_PDB 89.2446% -79 - C5 -1UBH 3.5 PHNL_DESVM
13 PsiBlast_PDB 89.2346% -76 - C5 -1UBT 3.4 PHNL_DESVM
20 PsiBlast_PDB 89.2245% -77 - C5 -1WUI 3.1 PHNL_DESVM
10 PsiBlast_PDB 89.2246% -77 - C5 -1UBM 3.4 PHNL_DESVM
15 PsiBlast_PDB 89.1446% -78 - C5 -1H2R 3.1 PHNL_DESVM
14 PsiBlast_PDB 89.0746% -77 - C5 -1UBU 3.6 PHNL_DESVM
19 PsiBlast_PDB 89.0545% -77 - C5 -1WUH 3.3 PHNL_DESVM
2 PsiBlast_PDB 88.8045% -80 - C5 -1H2A 3.0 PHNL_DESVM
27 PsiBlast_CBE 87.4641% -74 - C5 -4IUC 3.7 MBHL_CUPNH
28 PsiBlast_CBE 87.4441% -74 - C5 -4IUB 3.6 MBHL_CUPNH
29 PsiBlast_CBE 87.2441% -74 - C5 -3RGW 3.6 MBHL_CUPNH
26 PsiBlast_CBE 87.1941% -75 - C5 -4TTT 3.6 MBHL_CUPNH