@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : jhp_0596: (2015-12-16 )
MFQPLLDAYTDSTRLDETDYKPPLNIALANWWPLDKRESKGFRRFILYFILSQRYTITLHQNPNEPSDLVFGSPIGSARKILSYQNTKRVFYTGENEVPNFNLFDYAIGFDELDFRDRYLRMPLYYASLHYKAESVNDTTAPYKLKDNSLYALKKPSHHFKENHPNLCAVVNDESDPLKRGFASFVASNPNAPIRNAFYDALNSIEPVTGGGSVKNTLGYNVKNKSEFLSQYKFNLCFENTQGYGYVTEKIIDAYFSHTIPIYWGSPSVAKDFNPKSFVNVCDFKNFDEAIDYVRYLHTHPNAYLDMLYENPLNTLDGKAYFYQNLSFKKILDFFKTILENDTIYHDNPFIFYRDLNEPLVAIDDLRVNYDDLRVNYDDLRVNYDDLRVNYDDLRVNYDDLRVNYDDLRVNYDRLLQNASPLLELSQNTTFKIYRKAYQKSLPLLRTIRRWVKK

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GDP_H_8(2NZX)
?
[Raw transfer]



GDP_G_7(2NZX)
?
[Raw transfer]



GDP_M_13(2NZY)
?
[Raw transfer]



GDP_I_9(2NZX)
?
[Raw transfer]



GDP_L_12(2NZY)
?
[Raw transfer]



GDP_N_14(2NZY)
?
[Raw transfer]



FUC_G_7(2NZY)
?
[Raw transfer]



FUC_E_5(2NZY)
?
[Raw transfer]
3 PsiBlast_PDB 99.1787%-116 - C4 -2NZY 6.6 ?
2 PsiBlast_PDB 98.4487%-114 - C4 -2NZX 7.3 ?
1 PsiBlast_PDB 98.0087%-114 - C4 -2NZW - ? -
11 PsiBlast_CBE 97.7187%-113 - C4 -2NZY 6.5 ?
16 HHSearch 97.4288%-113 - C4 -2NZW - ? -
14 PsiBlast_CBE 97.3587%-114 - C4 -2NZW - ? -
15 PsiBlast_CBE 97.3287%-113 - C4 -2NZW - ? -
13 PsiBlast_CBE 97.3287%-113 - C4 -2NZX 7.2 ?
12 PsiBlast_CBE 97.2187%-114 - C4 -2NZX 7.3 ?
10 PsiBlast_CBE 97.1487%-110 - C4 -2NZY 6.9 ?
37 Fugue 96.5686%-113 - C4 -2NZW - ? -
41 Fugue 49.9310% -48 - C2 -1Y4C - MALE_ECOLI -
28 HHSearch 42.055% -74 - C4 -3OY2 - ? -
33 HHSearch 41.3316% -59 - C4 -3RHZ - ? -
18 HHSearch 40.369% -46 - C4 -3QHP - ? -
20 HHSearch 38.537% -75 - C4 -2R60 - ? -
44 Fugue 38.3116% -5 - C3 -4BVA - CRYM_MOUSE -
25 HHSearch 37.5414% -53 - C4 -2QZS - GLGA_ECOLI -
36 HHSearch 37.1716% -46 - C4 -1RZU - GLGA1_RHIRD -
17 HHSearch 37.1021% -39 - C4 -1JG7 - GSTB_BPT4 -