@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : jhp_0607: (2015-12-16 )
MKNKRSQNSPYVTPDNPYLTLEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGKLSKLRASIVSAHGFTKLAKAIALQDYLRVSSSEEISKGREKPSILSSAFEALMAGVYLEAGLAKVRKIIQNLLNRAYKRLDLEHLFMDYKTALQELTQAQFCVIPTYQLLQEKGPDHHKEFEMALYIQDKMYATAKGKSKKEAEQQCAYQALQKLKEAK

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

A_D_16(4M30)
RNC_AQUAE
[Raw transfer]




A_C_12(4M30)
RNC_AQUAE
[Raw transfer]




C_D_12(4M2Z)
RNC_AQUAE
[Raw transfer]




NACID_D_3(2NUG)
RNC_AQUAE
[Raw transfer]

-

NACID_D_3(2NUG)
RNC_AQUAE
[Raw transfer]

-

NACID_C_1(2NUG)
RNC_AQUAE
[Raw transfer]

-

NACID_D_3(2NUG)
RNC_AQUAE
[Raw transfer]

-

A_D_16(4M30)
RNC_AQUAE
[Raw transfer]




C_C_9(4M2Z)
RNC_AQUAE
[Raw transfer]




C_D_12(4M2Z)
RNC_AQUAE
[Raw transfer]




52 Fugue 86.6334% -74 - C3 -1O0W - RNC_THEMA -
22 PsiBlast_CBE 86.2438% -92 - C3 -4M30 3.1 RNC_AQUAE
24 PsiBlast_CBE 86.2038% -95 - C3 -2NUG 4.9 RNC_AQUAE
23 PsiBlast_CBE 86.0238% -95 - C3 -4M2Z 3.1 RNC_AQUAE
11 PsiBlast_PDB 85.5438% -90 - C3 -4M30 3.2 RNC_AQUAE
27 PsiBlast_CBE 85.5038% -94 - C3 -1YYK - RNC_AQUAE -
62 HHSearch 85.4934% -73 - C3 -1O0W - RNC_THEMA -
3 PsiBlast_PDB 85.0434% -84 - C3 -1O0W - RNC_THEMA -
14 PsiBlast_PDB 84.9038% -90 - C3 -2EZ6 - RNC_AQUAE -
13 PsiBlast_PDB 84.2738% -89 - C3 -1RC7 - RNC_AQUAE -
12 PsiBlast_PDB 84.2738% -95 - C3 -1YZ9 - RNC_AQUAE -
10 PsiBlast_PDB 84.2738% -88 - C3 -4M2Z 2.9 RNC_AQUAE
63 HHSearch 84.0338% -93 - C3 -2NUG 4.9 RNC_AQUAE
9 PsiBlast_PDB 83.9938% -94 - C3 -2NUG 4.9 RNC_AQUAE
5 PsiBlast_PDB 83.9238% -95 - C3 -1YYK - RNC_AQUAE -
7 PsiBlast_PDB 83.8038% -92 - C3 -2NUE - RNC_AQUAE -
29 PsiBlast_CBE 83.7438% -92 - C3 -2EZ6 - RNC_AQUAE -
30 PsiBlast_CBE 83.5938% -92 - C3 -1YYO - RNC_AQUAE -
28 PsiBlast_CBE 83.2838% -91 - C3 -1YZ9 - RNC_AQUAE -
8 PsiBlast_PDB 82.4838% -89 * C3 *2NUF - RNC_AQUAE -