@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : jhp_0641: (2015-12-17 )
MQDHLVNETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVAYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSIPPHRIDEIIDALAHVLGNPNAELDKILEFVKGPDFPTGGIIYGKAGIVEAYKTGRGRVKVRAKVHVEKTKNKEIIVLGEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSPSPEAAKNALIERFSLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGILKSEDRLNEVVKTELLEVKEQFSSPRRTEIQESYESIDTEDLIANEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLISLAPNEKIMATLSTKDFSDERSLAFFTKNGVVKRTNLSEFGGNRSYSGIRAIVLDEGDELVGAKVVDKNAKHLLIASYLGMFIKFPLEDVREIGRTTRGVMGIRLNENDFVVGAVVISDDSNKLLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQKTGNLVSVISVDDENLNLMILTASAKMIRVSIKDIRETGRNASGVKLINTADKVVYVNSCPKEEEPENLETSSVQNLFE

Atome Classification :

(41 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NACID_E_5(3RAD)
PARC_STRPN
[Raw transfer]
-
GOL_A_4(3ILW)
GYRA_MYCTU
[Raw transfer]



GOL_B_8(3ILW)
GYRA_MYCTU
[Raw transfer]



SM8_B_8(2Y3P)
GYRA_ECOLI
[Raw transfer]



GOL_A_4(3ILW)
GYRA_MYCTU
[Raw transfer]



NACID_H_8(3LTN)
PARC_STRPN
[Raw transfer]
-
NACID_H_8(3RAE)
PARC_STRPN
[Raw transfer]
-
CHAIN_H_8(4KPE)
PARC_STRPN
[Raw transfer]
-
SM8_A_5(2Y3P)
GYRA_ECOLI
[Raw transfer]



CHAIN_H_8(4KOE)
PARC_STRPN
[Raw transfer]
-
NACID_H_8(3RAF)
PARC_STRPN
[Raw transfer]
-
NACID_H_8(3RAD)
PARC_STRPN
[Raw transfer]
-
NACID_H_8(3K9F)
PARC_STRPN
[Raw transfer]
-
NACID_H_8(3KSA)
PARC_STRPN
[Raw transfer]
-
CHAIN_H_8(4KPF)
PARC_STRPN
[Raw transfer]
-
MPD_B_5(3IFZ)
GYRA_MYCTU
[Raw transfer]



MPD_A_3(3IFZ)
GYRA_MYCTU
[Raw transfer]



MFX_H_10(3FOF)
PARC_STRPN
[Raw transfer]



NACID_F_6(3RAE)
PARC_STRPN
[Raw transfer]
-
NACID_F_6(3K9F)
PARC_STRPN
[Raw transfer]
-
NACID_E_5(3KSA)
PARC_STRPN
[Raw transfer]
-
NACID_F_4(2XCR)
GYRA_STAAN
[Raw transfer]
-
CHAIN_F_6(4KPE)
PARC_STRPN
[Raw transfer]
-
NACID_F_4(2XCR)
GYRA_STAAN
[Raw transfer]
-
NACID_E_5(3RAF)
PARC_STRPN
[Raw transfer]
-
NACID_F_6(3RAD)
PARC_STRPN
[Raw transfer]
-
NACID_E_3(4BUL)
GYRA_STAAN
[Raw transfer]
-
CHAIN_F_6(4KOE)
PARC_STRPN
[Raw transfer]
-
NACID_F_6(3LTN)
PARC_STRPN
[Raw transfer]
-
CHAIN_F_6(4KPF)
PARC_STRPN
[Raw transfer]
-
NACID_F_6(3KSB)
PARC_STRPN
[Raw transfer]
-
NACID_W_8(2XCR)
GYRA_STAAN
[Raw transfer]
-
NACID_E_5(3KSB)
PARC_STRPN
[Raw transfer]
-
NACID_W_8(2XCR)
GYRA_STAAN
[Raw transfer]
-
NACID_E_5(3FOF)
PARC_STRPN
[Raw transfer]
-
NACID_E_5(3FOE)
PARC_STRPN
[Raw transfer]
-
45 HHSearch 90.7236% -87 * C6 *1ZVU - PARC_ECOLI -
2 PsiBlast_PDB 89.5355% -88 - C6 -4BUL 5.9 GYRA_STAAN (first)
27 PsiBlast_CBE 88.5252% -92 - C6 -2Y3P 4.1 GYRA_ECOLI (first)
22 PsiBlast_CBE 87.9858% -86 - C6 -4DDQ - GYRA_BACSU -
21 PsiBlast_CBE 87.8758% -86 - C6 -4DDQ - GYRA_BACSU -
5 PsiBlast_PDB 87.8752% -89 - C6 -2Y3P 3.8 GYRA_ECOLI (first)
25 PsiBlast_CBE 87.7955% -85 - C6 -2XCR 5.4 GYRA_STAAN (first)
23 PsiBlast_CBE 87.7955% -88 - C6 -2XCR 4.1 GYRA_STAAN (first)
1 PsiBlast_PDB 87.5558% -83 - C6 -4DDQ - GYRA_BACSU -
3 PsiBlast_PDB 87.4355% -86 - C6 -2XCR 3.2 GYRA_STAAN (first)
7 PsiBlast_PDB 87.4252% -89 - C6 -1AB4 - GYRA_ECOLI -
24 PsiBlast_CBE 87.3255% -82 - C6 -2XCR 3.8 GYRA_STAAN (first)
4 PsiBlast_PDB 87.2452% -88 - C6 -4TMA - ? -
26 PsiBlast_CBE 86.6752% -91 - C6 -4TMA - ? -
19 PsiBlast_PDB 83.7044% -83 - C6 -4KOE 5.5 PARC_STRPN
17 PsiBlast_PDB 83.2944% -83 - C6 -3RAD 4.1 PARC_STRPN
14 PsiBlast_PDB 83.2944% -89 - C6 -3KSB 4.1 PARC_STRPN
38 PsiBlast_CBE 83.2544% -89 - C6 -3KSB 5.8 PARC_STRPN
16 PsiBlast_PDB 83.2344% -82 - C6 -3RAF 7.4 PARC_STRPN
31 PsiBlast_CBE 83.2044% -85 - C6 -4KPF 4.7 PARC_STRPN
20 PsiBlast_PDB 83.0744% -87 - C6 -4KPE 4.5 PARC_STRPN
18 PsiBlast_PDB 83.0244% -84 - C6 -3RAE 5.0 PARC_STRPN
40 PsiBlast_CBE 83.0044% -83 - C6 -3K9F 4.9 PARC_STRPN
28 PsiBlast_CBE 82.9447% -87 - C6 -3IFZ 3.1 GYRA_MYCTU
34 PsiBlast_CBE 82.9344% -86 - C6 -3RAF 5.3 PARC_STRPN
33 PsiBlast_CBE 82.9344% -84 - C6 -4KOE 5.4 PARC_STRPN
35 PsiBlast_CBE 82.9144% -83 - C6 -3RAE 3.7 PARC_STRPN
12 PsiBlast_PDB 82.8944% -83 - C6 -3K9F 3.8 PARC_STRPN
13 PsiBlast_PDB 82.8044% -88 - C6 -3KSA 4.6 PARC_STRPN
36 PsiBlast_CBE 82.7444% -88 - C6 -3RAD 4.3 PARC_STRPN
9 PsiBlast_PDB 82.7248% -88 - C6 -3ILW 2.7 GYRA_MYCTU
39 PsiBlast_CBE 82.6344% -89 - C6 -3KSA 3.2 PARC_STRPN
29 PsiBlast_CBE 82.6348% -86 - C6 -3ILW 2.4 GYRA_MYCTU
8 PsiBlast_PDB 82.5147% -87 - C6 -3IFZ 3.2 GYRA_MYCTU
37 PsiBlast_CBE 82.4944% -84 - C6 -3LTN 4.5 PARC_STRPN
15 PsiBlast_PDB 82.4744% -84 - C6 -3LTN 4.9 PARC_STRPN
48 HHSearch 82.4648% -87 - C6 -3ILW 2.7 GYRA_MYCTU
32 PsiBlast_CBE 82.3444% -85 - C6 -4KPE 3.5 PARC_STRPN
30 PsiBlast_CBE 82.2544% -85 - C6 -4KPF 4.6 PARC_STRPN
10 PsiBlast_PDB 77.8544% -79 - C6 -3FOE Error PARC_STRPN
11 PsiBlast_PDB 76.8244% -83 - C6 -3FOF 4.5 PARC_STRPN