@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : jhp_0653: (2015-12-17 )
MDILKAEHLNKQIKKTKIVSDVSLEVKSGEVVGLLGPNGAGKTTTFYMICGLLEPSGGSVYLNDVDLAKYPLHKRSNLGIGYLPQESSIFKELSVEENLALAGESTFKNSKESEEKMESLLDAFNIQAIRERKGMSLSGGERRRVEIARALMKNPKFVLLDEPFAGVDPIAVIDIQRIIESLIGLNIGVLITDHNVRETLSVCHRAYVIKSGTLLASGNANEIYENALVRKYYLGENFKV

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_A_4(4P33)
LPTB_ECOLI
[Raw transfer]




ATP_A_3(4QC2)
?
[Raw transfer]




ATP_B_9(4P33)
LPTB_ECOLI
[Raw transfer]




ATP_B_5(4QC2)
?
[Raw transfer]




ADP_A_3(4P32)
LPTB_ECOLI
[Raw transfer]




ADP_B_5(4P32)
LPTB_ECOLI
[Raw transfer]




ADP_A_3(4P31)
LPTB_ECOLI
[Raw transfer]




1 PsiBlast_PDB 99.4155%-118 - C1 -4WBS - ? -
21 PsiBlast_CBE 97.1755%-116 - C1 -4WBS - ? -
4 PsiBlast_PDB 93.2055%-108 - C1 -4P33 6.7 LPTB_ECOLI
24 PsiBlast_CBE 92.9155%-108 - C1 -4P33 6.5 LPTB_ECOLI
3 PsiBlast_PDB 92.4255%-106 - C1 -4P32 5.4 LPTB_ECOLI
2 PsiBlast_PDB 91.4455%-102 - C1 -4QC2 6.1 ?
22 PsiBlast_CBE 91.4055%-108 - C1 -4QC2 6.4 ?
23 PsiBlast_CBE 90.2755%-106 - C1 -4P32 5.9 LPTB_ECOLI
6 PsiBlast_PDB 76.9732%-109 - C1 -1JI0 - ? -
68 HHSearch 76.3532%-111 - C1 -1JI0 - ? -
26 PsiBlast_CBE 76.1233%-102 - C1 -1G9X - LIVG_METJA -
10 PsiBlast_PDB 75.3933%-100 - C1 -1G6H - LIVG_METJA -
77 HHSearch 74.5134% -97 - C1 -1G6H - LIVG_METJA -
25 PsiBlast_CBE 73.4433% -91 - C1 -1G9X - LIVG_METJA -
12 PsiBlast_PDB 73.2633% -92 - C1 -1GAJ - LIVG_METJA -
11 PsiBlast_PDB 72.1733% -95 - C1 -1G9X - LIVG_METJA -
63 HHSearch 70.7533%-105 - C1 -2YYZ - ? -
60 HHSearch 70.6730%-105 - C1 -2IT1 - ? -
15 PsiBlast_PDB 70.3831%-110 - C1 -1V43 - ? -
8 PsiBlast_PDB 70.2230%-105 - C1 -2IT1 - ? -
5 PsiBlast_PDB 59.5355% 0 - C1 -4P31 5.7 LPTB_ECOLI