@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : jhp_0714: (2015-12-17 )
MQAKIKNKRVLVKFSGEALAGDNQFGIDIHVLDHIAKEIRSLVENDIEVGIVIGGGNIIRGVSAAQGGIIRRTSGDYMGMLATVINAVAMQEALEHIGLDTRVQSAIEIKEICESYIYRKAIRHLEKGRVVIFGAGTGNPFFTTDTAATLRAIEIGSDLIIKATKVDGIYDKDPNKFKDAKKLDTLSYNDALIGDIEVMDDTAISLAKDNKLPIVVCNMFKKGNLLQVIKHQQGVFSMVK

Atome Classification :

(24 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

UDP_B_13(2BND)
PYRH_ECOLI
[Raw transfer]



UDP_A_7(2BND)
PYRH_ECOLI
[Raw transfer]



UTP_A_3(2BNF)
PYRH_ECOLI
[Raw transfer]



U5P_A_7(2BNE)
PYRH_ECOLI
[Raw transfer]



U5P_B_10(2BNE)
PYRH_ECOLI
[Raw transfer]



U5P_A_7(2BNE)
PYRH_ECOLI
[Raw transfer]



GOL_A_4(4A7W)
PYRH_HELPY
[Raw transfer]



GOL_B_6(4A7W)
PYRH_HELPY
[Raw transfer]



GOL_A_5(1YBD)
PYRH_NEIMB
[Raw transfer]



GOL_A_5(1YBD)
PYRH_NEIMB
[Raw transfer]
25 PsiBlast_CBE 98.1999%-134 - C1 -4A7W 2.6 PYRH_HELPY
1 PsiBlast_PDB 98.0799%-132 - C1 -4A7W 3.2 PYRH_HELPY
22 PsiBlast_CBE 97.7099%-135 - C1 -4A7X - PYRH_HELPY -
2 PsiBlast_PDB 97.1499%-130 - C1 -4A7X - PYRH_HELPY -
23 PsiBlast_CBE 97.0999%-131 - C1 -4A7X - PYRH_HELPY -
21 PsiBlast_CBE 96.5699%-134 - C1 -4A7X - PYRH_HELPY -
24 PsiBlast_CBE 95.7199%-135 - C1 -4A7X - PYRH_HELPY -
30 PsiBlast_CBE 82.0353%-112 - C1 -3EK5 - PYRH_XANCP -
28 PsiBlast_CBE 80.8953%-114 - C1 -3EK5 - PYRH_XANCP -
37 PsiBlast_CBE 80.7750%-118 - C1 -2BNE 5.9 PYRH_ECOLI
29 PsiBlast_CBE 80.1153%-117 - C1 -3EK5 - PYRH_XANCP -
63 HHSearch 79.5953%-118 - C1 -3EK6 - PYRH_XANCP -
6 PsiBlast_PDB 79.4850%-122 - C1 -2BNE 5.8 PYRH_ECOLI
3 PsiBlast_PDB 79.4453%-113 - C1 -3EK5 - PYRH_XANCP -
27 PsiBlast_CBE 79.3353%-115 - C1 -3EK5 - PYRH_XANCP -
4 PsiBlast_PDB 79.1453%-116 - C1 -3EK6 - PYRH_XANCP -
55 Fugue 78.8649%-124 - C1 -2BNE 5.8 PYRH_ECOLI
9 PsiBlast_PDB 78.8147%-123 - C1 -2BNF 7.8 PYRH_ECOLI
54 Fugue 78.7946%-125 - C1 -2A1F - PYRH_HAEIN -
8 PsiBlast_PDB 78.3050%-137 - C1 -2A1F - PYRH_HAEIN -
64 HHSearch 78.0749%-125 * C1 *1YBD 2.9 PYRH_NEIMB
31 PsiBlast_CBE 77.6450%-121 - C1 -2BND 7.5 PYRH_ECOLI
5 PsiBlast_PDB 76.0450%-119 - C1 -2BND 7.7 PYRH_ECOLI
12 PsiBlast_PDB 75.8349%-125 - C1 -1YBD 2.9 PYRH_NEIMB