@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : jhp_0799: (2015-12-18 )
MKIKIQKIHPNALIPKYQTEGSSGFDLHAVEEVVIKPHSVGLVRIGICLSLEVGYELQVRTRSGLALNHQVMVLNSPGTVDNDYRGEIKVILANLSDKDFKVQVGDRIAQGVVQKTYKAEFIECEQLDETSRGSGGFGSTGVSKA

Atome Classification :

(64 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

UMP_C_5(2OL1)
?
[Raw transfer]




DUP_A_3(3HZA)
DUT_MYCTU
[Raw transfer]




UMP_A_10(1SNF)
DUT_MYCTU
[Raw transfer]




DUP_A_3(3I93)
DUT_MYCTU
[Raw transfer]




DUT_C_7(1SMC)
DUT_MYCTU
[Raw transfer]




UMP_C_5(2OL1)
?
[Raw transfer]




UMP_C_5(2OL1)
?
[Raw transfer]




DUT_C_5(1SMC)
DUT_MYCTU
[Raw transfer]




UMP_C_5(2OL1)
?
[Raw transfer]




DUP_A_9(1SJN)
DUT_MYCTU
[Raw transfer]




DUD_C_7(1Q5H)
DUT_HUMAN
[Raw transfer]




DUT_C_10(1SM8)
DUT_MYCTU
[Raw transfer]




UMP_B_11(1SNF)
DUT_MYCTU
[Raw transfer]




DUP_B_11(1SJN)
DUT_MYCTU
[Raw transfer]




DUD_A_5(3C2T)
?
[Raw transfer]




DUD_A_5(3CA9)
?
[Raw transfer]




DUD_C_6(2OL0)
?
[Raw transfer]




DUD_A_5(3C2T)
?
[Raw transfer]




DUD_B_6(3CA9)
?
[Raw transfer]




DUD_B_9(3C3I)
?
[Raw transfer]




DUD_B_9(1SLH)
DUT_MYCTU
[Raw transfer]




DUT_B_9(1SM8)
DUT_MYCTU
[Raw transfer]




DUD_A_5(3CA9)
?
[Raw transfer]




DUD_C_7(1SLH)
DUT_MYCTU
[Raw transfer]




DUD_A_7(3C3I)
?
[Raw transfer]




UMP_C_12(1SNF)
DUT_MYCTU
[Raw transfer]




DUD_B_10(3C3I)
?
[Raw transfer]




DUD_A_8(1SLH)
DUT_MYCTU
[Raw transfer]




DUD_B_8(3C3I)
?
[Raw transfer]




DUT_C_8(1SM8)
DUT_MYCTU
[Raw transfer]




DUD_B_6(3C2T)
?
[Raw transfer]




EDO_A_2(3MDX)
DUT_BRUA2
[Raw transfer]




EDO_A_2(3MDX)
DUT_BRUA2
[Raw transfer]




EDO_B_13(3MBQ)
DUT_BRUA2
[Raw transfer]




DUP_C_8(2OKE)
?
[Raw transfer]




EDO_C_17(3MBQ)
DUT_BRUA2
[Raw transfer]




DUP_B_11(1SJN)
DUT_MYCTU
[Raw transfer]




DUP_A_4(3P48)
DUT_YEAST
[Raw transfer]




UMP_C_9(3F4F)
DUT_YEAST
[Raw transfer]




DUP_B_7(2OKE)
?
[Raw transfer]




DUP_A_6(2OKE)
?
[Raw transfer]




DUD_B_7(2OL0)
?
[Raw transfer]




DUD_C_8(2OL0)
?
[Raw transfer]




DUD_C_6(2OL0)
?
[Raw transfer]




PEG_C_10(3F4F)
DUT_YEAST
[Raw transfer]




EDO_B_9(2OKB)
?
[Raw transfer]




EDO_A_6(2OKD)
?
[Raw transfer]




EDO_B_7(2OKD)
?
[Raw transfer]




MKH_B_6(3ARA)
DUT_HUMAN
[Raw transfer]




125 HHSearch 94.0541%-108 - C2 -3HZA 3.5 DUT_MYCTU
26 PsiBlast_CBE 92.9539%-117 - C2 -4OOP - DUT_ARATH -
33 PsiBlast_CBE 90.0536%-109 - C2 -3EHW - DUT_HUMAN -
32 PsiBlast_CBE 90.0336%-108 - C2 -3EHW - DUT_HUMAN -
29 PsiBlast_CBE 89.6236%-111 - C2 -3EHW - DUT_HUMAN -
8 PsiBlast_PDB 89.5136%-110 - C2 -3EHW - DUT_HUMAN -
7 PsiBlast_PDB 88.8236%-119 - C2 -2HQU - DUT_HUMAN -
38 PsiBlast_CBE 88.7936%-110 - C2 -2HQU - DUT_HUMAN -
40 PsiBlast_CBE 88.4236%-120 - C2 -1Q5H - DUT_HUMAN -
92 PsiBlast_CBE 88.1338%-108 - C2 -3HZA - DUT_MYCTU -
30 PsiBlast_CBE 87.6836%-107 - C2 -3EHW - DUT_HUMAN -
86 PsiBlast_CBE 87.3638%-107 - C2 -1SIX - DUT_MYCTU -
4 PsiBlast_PDB 87.3539%-117 - C2 -4OOP - DUT_ARATH -
39 PsiBlast_CBE 87.1936%-121 - C2 -1Q5H 3.7 DUT_HUMAN
90 PsiBlast_CBE 86.4538%-107 - C2 -3I93 3.4 DUT_MYCTU
5 PsiBlast_PDB 86.3339%-118 - C2 -4OOQ - ? -
3 PsiBlast_PDB 86.3237%-113 - C2 -3SO2 - ? -
91 PsiBlast_CBE 86.2538%-102 - C2 -3LOJ - DUT_MYCTU -
122 HHSearch 86.2445%-125 - C2 -3MDX 3.0 DUT_BRUA2
74 PsiBlast_CBE 86.2238%-104 - C2 -2PY4 - DUT_MYCTU -
134 HHSearch 85.6136%-126 - C2 -3CA9 3.1 ?
121 HHSearch 85.1041%-109 - C2 -1SJN 3.2 DUT_MYCTU
88 PsiBlast_CBE 85.1038%-110 - C2 -1SJN 3.6 DUT_MYCTU
76 PsiBlast_CBE 84.4638%-106 - C2 -1SNF 3.5 DUT_MYCTU
135 HHSearch 84.4537%-114 - C2 -3F4F 2.4 DUT_YEAST
84 PsiBlast_CBE 84.2738%-107 - C2 -1SLH 2.9 DUT_MYCTU
124 HHSearch 84.0936%-123 - C2 -3C2T 2.6 ?
89 PsiBlast_CBE 83.9338%-111 - C2 -1SJN 3.6 DUT_MYCTU
79 PsiBlast_CBE 83.8638%-116 - C2 -1SMC 3.5 DUT_MYCTU
42 PsiBlast_CBE 83.8538%-116 - C2 -3C3I 2.4 ?
43 PsiBlast_CBE 83.8038%-125 - C2 -3C3I 2.9 ?
81 PsiBlast_CBE 83.7638%-105 - C2 -1SM8 3.1 DUT_MYCTU
77 PsiBlast_CBE 83.3938%-115 - C2 -1SNF 3.4 DUT_MYCTU
15 PsiBlast_PDB 83.1236%-105 - C2 -3F4F 2.3 DUT_YEAST
85 PsiBlast_CBE 82.9438%-107 - C2 -1SLH 3.0 DUT_MYCTU
2 PsiBlast_PDB 82.4646%-122 - C2 -3MDX 3.0 DUT_BRUA2
21 PsiBlast_CBE 82.3246%-118 - C2 -3MBQ 3.2 DUT_BRUA2
82 PsiBlast_CBE 82.3138%-115 - C2 -1SM8 3.1 DUT_MYCTU
83 PsiBlast_CBE 82.3038%-113 - C2 -1SLH 3.0 DUT_MYCTU
128 HHSearch 82.0838%-111 * C2 *2OL1 4.5 ?
75 PsiBlast_CBE 81.9538%-115 - C2 -1SNF 3.4 DUT_MYCTU
18 PsiBlast_PDB 81.7837%-127 - C2 -3CA9 3.1 ?
78 PsiBlast_CBE 81.3238%-113 - C2 -1SMC 3.6 DUT_MYCTU
130 HHSearch 80.9137%-114 - C2 -3P48 3.2 DUT_YEAST
80 PsiBlast_CBE 80.8838%-111 - C2 -1SM8 2.7 DUT_MYCTU
41 PsiBlast_CBE 80.6738%-123 - C2 -3C3I 2.2 ?
123 HHSearch 80.6535%-108 - C2 -3ARA 3.0 DUT_HUMAN
22 PsiBlast_CBE 79.6946%-125 - C2 -3MBQ 2.4 DUT_BRUA2
72 PsiBlast_CBE 79.6137%-133 - C2 -3CA9 2.9 ?
17 PsiBlast_PDB 79.3537%-124 - C2 -3C2T 3.3 ?
13 PsiBlast_PDB 76.9238%-124 - C2 -3C3I 2.7 ?
71 PsiBlast_CBE 76.4137%-128 - C2 -3C2T 3.6 ?
99 PsiBlast_CBE 75.4339%-101 - C2 -2OL0 3.4 ?
97 PsiBlast_CBE 74.0339%-100 - C2 -2OL0 3.4 ?
94 PsiBlast_CBE 73.2139%-103 - C2 -2OL1 5.7 ?
96 PsiBlast_CBE 73.0439%-100 - C2 -2OL1 4.5 ?
95 PsiBlast_CBE 72.8439%-109 - C2 -2OL1 5.1 ?
103 PsiBlast_CBE 72.7539%-102 - C2 -2OKD 2.8 ?
105 PsiBlast_CBE 72.5439% -99 - C2 -2OKD 2.7 ?
98 PsiBlast_CBE 72.4039%-106 - C2 -2OL0 3.1 ?
100 PsiBlast_CBE 71.2339%-103 - C2 -2OKE 4.2 ?
101 PsiBlast_CBE 70.7039% -97 - C2 -2OKE 2.6 ?
108 PsiBlast_CBE 70.6739% -97 - C2 -2OKB 3.0 ?
102 PsiBlast_CBE 69.9239%-103 - C2 -2OKE 2.9 ?