@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : jhp_0855: (2015-12-18 )
MKIFINGFGRIGRCVLRAILERNDTNPQLEVIGINDPANWEILAYLLEHDSTHGLLNKEVRYSNGKLIIGSLEIPVFNSIKDLKGVGVIIECSGKFLEPKTLENYLLLGAKKVLLSAPFMGEYDEKQYPTLVYGVNHFLYQNQAIVSNASCTTNAIAPICAILDKAFSIKEGMLTTIHSYTSDQKLIDLAHPLDKRRSRAAASNIIPTTTKAALALHKVLPNLKNKMHGHSVRVPSLDVSMIDLSLFLEKKALKDPINDLLITASKGTLKGVLEIDLKERVSSDFISNPNSVIIAPDLTFTLENMVKIMGWYDNEWGYSNRLVDMAQFMYHY

Atome Classification :

(46 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAD_B_4(3L0D)
?
[Raw transfer]




NAD_P_7(3PFW)
G3PT_HUMAN
[Raw transfer]




NAD_G_13(1SZJ)
G3P_PANVR
[Raw transfer]




NAD_P_4(1GAD)
G3P1_ECOLI
[Raw transfer]




NAD_O_3(3PFW)
G3PT_HUMAN
[Raw transfer]




NAD_A_3(3CPS)
?
[Raw transfer]




NAD_O_3(3H9E)
G3PT_HUMAN
[Raw transfer]




NAD_C_9(4P8R)
?
[Raw transfer]




NAD_A_3(3PYM)
G3P3_YEAST
[Raw transfer]




NAD_P_12(3H9E)
G3PT_HUMAN
[Raw transfer]




NAD_A_5(4P8R)
?
[Raw transfer]




NAD_A_3(4BOY)
?
[Raw transfer]




NAD_O_3(3H9E)
G3PT_HUMAN
[Raw transfer]




NAD_R_15(1SZJ)
G3P_PANVR
[Raw transfer]




NAD_C_3(1DC6)
G3P1_ECOLI
[Raw transfer]




NAD_B_7(4P8R)
?
[Raw transfer]




NAD_D_4(1DC6)
G3P1_ECOLI
[Raw transfer]




NAD_A_3(2EP7)
G3P_AQUAE
[Raw transfer]




NAD_Q_15(1HDG)
G3P_THEMA
[Raw transfer]




NAD_A_3(3ZCX)
?
[Raw transfer]




NAD_B_4(4BOY)
?
[Raw transfer]




NAD_E_5(1VC2)
?
[Raw transfer]




NAD_B_4(3ZCX)
?
[Raw transfer]




NDP_O_12(1RM4)
G3PA_SPIOL
[Raw transfer]




NAD_O_13(1HDG)
G3P_THEMA
[Raw transfer]




NAD_O_13(1HDG)
G3P_THEMA
[Raw transfer]




NAD_A_3(3L0D)
?
[Raw transfer]




NAD_G_9(1GPD)
G3P_HOMAM
[Raw transfer]




NAD_R_10(1GPD)
G3P_HOMAM
[Raw transfer]




GOL_O_5(3PFW)
G3PT_HUMAN
[Raw transfer]




MES_Y_25(1S7C)
G3P1_ECOLI
[Raw transfer]




GOL_O_6(3PFW)
G3PT_HUMAN
[Raw transfer]




BME_E_5(2I5P)
G3P1_KLULA
[Raw transfer]




BME_F_6(2I5P)
G3P1_KLUMA
[Raw transfer]




CHAIN_D_4(3ZDF)
?
[Raw transfer]

-

CHAIN_C_3(3ZDF)
?
[Raw transfer]

-

115 HHSearch 94.1742%-110 - C4 -1RM4 7.7 G3PA_SPIOL
114 HHSearch 93.7043%-112 - C4 -2B4R - ? -
66 PsiBlast_CBE 93.2841%-117 - C4 -2I5P 2.6 G3P1_KLUMA
17 PsiBlast_PDB 93.0241%-116 - C4 -2I5P 2.6 G3P1_KLULA (first)
128 HHSearch 92.6041%-113 - C4 -3V1Y - G3PC1_ORYSJ -
117 HHSearch 92.2739%-119 - C4 -2X5J - E4PD_ECOLI -
122 HHSearch 92.2541%-114 - C4 -3PYM 8.8 G3P3_YEAST
120 HHSearch 92.0642%-114 - C4 -3CPS 9.4 ?
126 HHSearch 92.0241%-111 - C4 -3H9E 9.1 G3PT_HUMAN
61 PsiBlast_CBE 91.8442%-113 - C4 -1CER - G3P_THEAQ -
58 PsiBlast_CBE 91.8042%-113 - C4 -1CER - G3P_THEAQ -
129 HHSearch 90.8941%-105 - C4 -2D2I - ? -
118 HHSearch 90.5745%-105 - C4 -1HDG 8.8 G3P_THEMA
23 PsiBlast_CBE 90.5342%-111 - C4 -4DBV - G3P_GEOSE -
46 PsiBlast_CBE 90.5142%-112 - C4 -1DBV - G3P_GEOSE -
24 PsiBlast_CBE 90.5042%-111 - C4 -3DBV - G3P_GEOSE -
21 PsiBlast_CBE 90.4942%-112 - C4 -4DBV - G3P_GEOSE -
64 PsiBlast_CBE 90.4342%-110 - C4 -1CER - G3P_THEAQ -
57 PsiBlast_CBE 90.3641%-104 - C4 -4P8R 9.5 ?
63 PsiBlast_CBE 90.2342%-108 - C4 -1CER - G3P_THEAQ -
6 PsiBlast_PDB 89.4644%-108 - C4 -1HDG 8.7 G3P_THEMA
13 PsiBlast_PDB 89.2241%-104 - C4 -4P8R 9.3 ?
86 PsiBlast_CBE 88.4640% -99 - C4 -1S7C 2.2 G3P1_ECOLI
16 PsiBlast_PDB 88.3542%-106 - C4 -1VC2 8.4 ?
90 PsiBlast_CBE 87.6338%-103 - C4 -3H9E 9.3 G3PT_HUMAN
88 PsiBlast_CBE 87.3338%-106 - C4 -3PFW 9.6 G3PT_HUMAN
36 PsiBlast_CBE 87.2544%-108 - C4 -1HDG 9.3 G3P_THEMA
82 PsiBlast_CBE 87.2340%-101 - C4 -1GAD 8.7 G3P1_ECOLI
56 PsiBlast_CBE 87.1641%-102 - C4 -4P8R 8.9 ?
70 PsiBlast_CBE 86.9141% -99 - C4 -3ZDF 3.6 ?
100 PsiBlast_CBE 86.8640%-107 - C4 -1SZJ 9.3 G3P_PANVR
87 PsiBlast_CBE 86.8138%-104 - C4 -3PFW 9.3 G3PT_HUMAN
99 PsiBlast_CBE 86.7740%-109 - C4 -1SZJ 9.4 G3P_PANVR
89 PsiBlast_CBE 86.5838%-106 - C4 -3H9E 9.2 G3PT_HUMAN
84 PsiBlast_CBE 86.5340% -99 - C4 -1DC6 9.1 G3P1_ECOLI
123 HHSearch 86.4542%-100 - C4 -2EP7 8.9 G3P_AQUAE
85 PsiBlast_CBE 86.3340% -96 - C4 -1DC6 8.9 G3P1_ECOLI
69 PsiBlast_CBE 86.0541% -99 - C4 -4BOY 8.1 ?
19 PsiBlast_PDB 85.9041%-100 - C4 -3ZCX 8.1 ?
65 PsiBlast_CBE 85.5941%-101 - C4 -3L0D 8.0 ?
20 PsiBlast_PDB 85.5841% -99 - C4 -3ZDF 3.8 ?
71 PsiBlast_CBE 85.0141% -99 - C4 -3ZCX 8.2 ?
68 PsiBlast_CBE 84.9841% -98 - C4 -4BOY 7.8 ?
15 PsiBlast_PDB 83.8941% -98 - C4 -3L0D 8.4 ?
18 PsiBlast_PDB 78.5140%-105 - C4 -1GPD 6.1 G3P_HOMAM
67 PsiBlast_CBE 73.8140% -95 - C4 -1GPD 4.1 G3P_HOMAM