@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : jhp_0876: (2015-12-19 )
MLKRASFVEVNTHSLRHNFNAVKNIVPKDACVMAVVKANAYGAGAIKASEIFLQEGANYLGVATLDEALELRSHFSQTPILILGYSPNTNASMLIDNDLSAMVFSLEQAEVFSQMALKSQKRLKVHLKIDTGMHRLGLEPTFKSIETIKKIRALKGLEVEGIFTHLSNADSNIKTHAKNQMKVFNAFLEQLLDQKIEFQYRHAYNSAGILSLCNGNENRLLNLYRPGIMLYGFYPSNEMKESSQTILKNVISLKARIVQIKRVKKGEFIGYGEHFYTNEETLVGVLALGYADGLVRALGNRIQVAINNQLAPLIGKVCMDQCFVKLNDIEAKEGDEVILFGDKSTKANDASEIATLLNTIPYETISTLSKRLERVYV

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

BME_A_5(3OO2)
ALR1_STAAC
[Raw transfer]




DCS_C_6(3E6E)
?
[Raw transfer]




IN5_A_3(1BD0)
ALR_GEOSE
[Raw transfer]




IN5_B_4(1BD0)
ALR_GEOSE
[Raw transfer]




DCS_B_5(3E6E)
?
[Raw transfer]




DCS_A_3(4LUT)
?
[Raw transfer]




DCS_A_4(3E6E)
?
[Raw transfer]




PLP_B_11(4A3Q)
ALR1_STAAM
[Raw transfer]




PLP_C_10(3E5P)
?
[Raw transfer]




PLP_B_7(3E5P)
?
[Raw transfer]




PLP_A_3(4A3Q)
ALR1_STAAM
[Raw transfer]




PLP_B_4(1XFC)
ALR_MYCTU
[Raw transfer]




PLP_A_4(3E5P)
?
[Raw transfer]




PLP_A_3(1XFC)
ALR_MYCTU
[Raw transfer]




PLP_A_5(1SFT)
ALR_GEOSE
[Raw transfer]




PLP_A_3(1XFC)
ALR_MYCTU
[Raw transfer]




PLP_B_6(1SFT)
ALR_GEOSE
[Raw transfer]




2 PsiBlast_PDB 94.5235%-113 - C3 -4LUS - ? -
31 HHSearch 94.3734%-106 - C3 -1BD0 7.5 ALR_GEOSE
1 PsiBlast_PDB 93.3935%-106 - C3 -4LUT 5.1 ?
27 PsiBlast_CBE 92.7133% -94 - C3 -1SFT 5.7 ALR_GEOSE
11 PsiBlast_PDB 92.5634%-103 - C3 -4ECL - ? -
10 PsiBlast_PDB 92.2531%-105 - C3 -1XFC 3.9 ALR_MYCTU
3 PsiBlast_PDB 92.1235% -99 - C3 -3OO2 - ALR1_STAAC -
7 PsiBlast_PDB 92.0933% -98 - C3 -1SFT 4.2 ALR_GEOSE
34 HHSearch 91.7132%-106 - C3 -1XFC 3.9 ALR_MYCTU
8 PsiBlast_PDB 91.6233% -96 - C3 -1BD0 - ALR_GEOSE -
25 PsiBlast_CBE 91.3534% -92 - C3 -3E5P 3.2 ?
9 PsiBlast_PDB 91.1633% -96 - C3 -3HA1 - ? -
28 PsiBlast_CBE 90.7733% -96 - C3 -1BD0 7.8 ALR_GEOSE
22 PsiBlast_CBE 90.6535%-102 - C3 -4A3Q 3.7 ALR1_STAAM
21 PsiBlast_CBE 90.5635% -98 - C3 -3OO2 Error ALR1_STAAC
26 PsiBlast_CBE 90.4834% -91 - C3 -3E5P 3.6 ?
29 PsiBlast_CBE 90.4631%-103 - C3 -1XFC 4.5 ALR_MYCTU
23 PsiBlast_CBE 90.3834% -92 - C3 -3E6E 5.6 ?
4 PsiBlast_PDB 89.6335% -99 - C3 -4A3Q 3.7 ALR1_STAAM
32 HHSearch 88.3635% -98 - C3 -3E5P 4.5 ?
6 PsiBlast_PDB 88.1834% -87 - C3 -3E6E 6.0 ?
24 PsiBlast_CBE 87.7934% -91 - C3 -3E6E 5.3 ?