@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : jhp_0895: (2015-12-19 )
MEIAVFGGGAWGRALAFAFGEKNEVKIISRRDLNEPLKKLNDALISKGSAPIEQVDLERGLKAALYVIAISVQHLREWFQNASLPKNAKVLIASKGIEVLNKAFVSEIAKDFIDPNALCFLAGPSFAAEIIQGLPCALVIHSNNQALALEFANKTPSFIRAYAQQDIIGGEIAGAYKNVIAIAGGVCDGLKLGNSAKASLLSRGLVEMQRFGAFFGGKTETFLGLSGAGDLFLTANSILSRNYRVGLGLAQNKPLEVVLEELGEVAEGVKTTNAIVEIARKYGIYTPIASELALLLKGKSVLESMNDLIRRA

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NDE_C_3(1N1E)
GPDA_LEIME
[Raw transfer]




NDE_D_4(1N1E)
GPDA_LEIME
[Raw transfer]




NDP_A_3(1Z82)
?
[Raw transfer]




NDP_A_3(1Z82)
?
[Raw transfer]




NAD_C_3(1EVZ)
GPDA_LEIME
[Raw transfer]




G3P_B_6(1Z82)
?
[Raw transfer]




1 PsiBlast_PDB 95.1839% -91 - C1 -1Z82 11.8 ?
21 PsiBlast_CBE 91.0032%-101 - C1 -1N1E 12.2 GPDA_LEIME
5 PsiBlast_PDB 90.7132%-105 - C1 -1M66 - GPDA_LEIME -
2 PsiBlast_PDB 90.6532%-109 - C1 -1EVY - GPDA_LEIME -
8 PsiBlast_PDB 90.5932%-104 - C1 -1N1G - GPDA_LEIME -
3 PsiBlast_PDB 90.4532%-108 - C1 -1EVZ 6.8 GPDA_LEIME
4 PsiBlast_PDB 89.9232%-105 - C1 -1JDJ - GPDA_LEIME -
6 PsiBlast_PDB 89.9132%-105 - C1 -1M67 - GPDA_LEIME -
7 PsiBlast_PDB 89.8332%-101 - C1 -1N1E 12.0 GPDA_LEIME
28 HHSearch 89.7638% -78 - C1 -1Z82 11.9 ?
9 PsiBlast_PDB 89.3231% -98 - C1 -3K96 - GPDA_COXBU -
22 PsiBlast_CBE 87.5431% -95 - C1 -3K96 - GPDA_COXBU -
44 Fugue 87.2531%-101 - C1 -1EVY - GPDA_LEIME -
24 HHSearch 85.4132% -96 - C1 -1EVY - GPDA_LEIME -
26 HHSearch 83.8429% -87 - C1 -3K96 - GPDA_COXBU -
10 PsiBlast_PDB 79.2227% -78 - C1 -2PLA - GPD1L_HUMAN -
27 HHSearch 78.3924% -92 - C1 -1TXG - GPDA_ARCFU -
25 HHSearch 77.1423% -85 * C1 *1X0V - GPDA_HUMAN -
29 HHSearch 72.0921% -87 - C1 -1YJ8 - ? -
14 PsiBlast_PDB 69.8526% -70 - C1 -1TXG - GPDA_ARCFU -