@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : jhp_0980: (2015-12-19 )
MIELDINASDKSLSHRAVIFSLLAQKPCFVRNFLMGEDCLSSLEIAQNLGAKVENTAKNSFKITPPTTIKEPNKILNCNNSGTSMRLYSGLLSAQKGLFVLSGDNSLNARPMKRIIEPLKAFGAKILGREDNHFAPLAIVGGPLKACDYESPIASAQVKSAFILSALQAQGISAYKESELSRNHTEIMLKSLGANIQNQDGVLKISPLEKPLESFDFTIANDPSSAFFLALACAITPKSRLLLKNVLLNPTRIEAFEVLKKMGAHIEYVIQSKDLEVIGDIYIEHAPLKAISIDQNIASLIDEIPALSIAMLFAKGKSMVRNAKDLRAKESDRIKAVVSNFKALGIECEEFEDGFYIEGLGDASQLKQHFSKIKPPIIKSFNDHRIAMSFAVLTLALPLEIDNLECANISFPTFQLWLNLFKKRSLNGN

Atome Classification :

(26 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GG9_A_2(2PQB)
AROA_AGRSC
[Raw transfer]



GG9_A_2(2PQD)
AROA_AGRSC
[Raw transfer]



RC1_A_2(2PQC)
AROA_AGRSC
[Raw transfer]



RC1_A_2(2PQC)
AROA_AGRSC
[Raw transfer]



S3P_A_4(2GG6)
AROA_AGRSC
[Raw transfer]



S3P_A_2(2GGA)
AROA_AGRSC
[Raw transfer]



S3P_A_2(4ZND)
AROA_COXBU
[Raw transfer]



S3P_A_2(2GGD)
AROA_AGRSC
[Raw transfer]



GPJ_A_3(2GGD)
AROA_AGRSC
[Raw transfer]



GPJ_A_3(2GGA)
AROA_AGRSC
[Raw transfer]
27 PsiBlast_CBE 95.0439% -94 - C8 -4EGR - AROA_COXBU -
32 PsiBlast_CBE 94.8839%-105 - C8 -3ROI - AROA_COXBU -
28 PsiBlast_CBE 94.8639% -95 - C8 -4EGR - AROA_COXBU -
25 PsiBlast_CBE 94.4939% -95 - C8 -4EGR - AROA_COXBU -
5 PsiBlast_PDB 94.1539% -91 - C8 -4ZND 4.3 AROA_COXBU
31 PsiBlast_CBE 94.0539% -89 - C8 -3SLH - AROA_COXBU -
26 PsiBlast_CBE 93.9739% -93 - C8 -4EGR - AROA_COXBU -
4 PsiBlast_PDB 93.7939% -93 - C8 -4EGR - AROA_COXBU -
24 PsiBlast_CBE 93.7239% -94 - C8 -4EGR - AROA_COXBU -
30 PsiBlast_CBE 93.7039% -92 - C8 -3SLH - AROA_COXBU -
2 PsiBlast_PDB 93.2939%-107 - C8 -3ROI - AROA_COXBU -
29 PsiBlast_CBE 93.1639% -90 - C8 -3SLH - AROA_COXBU -
23 PsiBlast_CBE 93.1038% -99 - C8 -3RMT - AROA1_BACHD -
45 HHSearch 92.8840% -92 * C8 *3SLH - AROA_COXBU -
3 PsiBlast_PDB 92.3139% -92 - C8 -3SLH - AROA_COXBU -
6 PsiBlast_PDB 92.1239% -96 - C8 -3TR1 - AROA_COXBU -
22 PsiBlast_CBE 91.8538%-100 - C8 -3RMT - AROA1_BACHD -
43 HHSearch 91.8232% -92 - C8 -2PQC 6.9 AROA_AGRSC
1 PsiBlast_PDB 91.0038%-102 - C8 -3RMT - AROA1_BACHD -
21 PsiBlast_CBE 90.7038% -99 - C8 -3RMT - AROA1_BACHD -
10 PsiBlast_PDB 88.9134% -93 - C8 -2PQD 9.1 AROA_AGRSC
15 PsiBlast_PDB 88.5533% -92 - C8 -2GG6 4.5 AROA_AGRSC
13 PsiBlast_PDB 88.5033% -93 - C8 -2PQC 6.9 AROA_AGRSC
11 PsiBlast_PDB 88.2534% -92 - C8 -2GGD 5.0 AROA_AGRSC
16 PsiBlast_PDB 88.0833% -92 - C8 -2GGA 5.1 AROA_AGRSC
12 PsiBlast_PDB 87.6933% -92 - C8 -2PQB 9.4 AROA_AGRSC