@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : jhp_0989: (2015-12-19 )
MDDLQEIMEDFLIEAFEMNEQLDQDLVELEHNPEDLDLLNRIFRVAHTIKGSSSFLNLNILTHLTHNMEDVLNRARKGEIKITPDIMDVVLRSIDLMKTLLVTIRDTGSDTNNGKENEIEEVVKKLQAITSQNLEGAKETSGTKEAPEKEVKKENKEKAKEEVKANKTPTTENLTSDNPLADEPDLDYANMSAEEVEAEIERLLNKRQEADKERRAQKKQEDQAKPKQEVAPAKETPKTETPKTETRKVPKAETKAKAKADTEENKAPSIGVEQTVRVDVRRLDHLMNLIGELVLGKNRLIRIYSDVEERYDGEKFLEELNQVVSSISAVTTDLQLAVMKTRMQPVGKVFNKFPRMVRDLSRELGKSIELIIEGEETELDKSIVEEIGDPLIHIIRNSCDHGIEPLEERRRLNKPETGKVQLSAYNEGNHIVIKISDDGKGLDPVMLKEKAIEKGVISERDAESMSDREAFNLIFKPGFSTRKVVSNVSGRGVGMDVVKTNIEKLNGIIEIDSEVGVGTTQKLKIPLTLAIIQALLVGVQEEYYAIPLSSVLETVRISQDEIYTVDGKSVLRLRDEVLSLVRLSDIFKVDAILESNSDVYVVIIGLADQKIGVIVDYLIGQEEVVIKSLGYYLKNTRGIAGATVRGDGKITLIVDVGAMMEMAKSIKVNITTLMNESENTKSKNSPSDYVVLAIDDSSTDRAIIRKCLKPLGITLLEATNGLEGLEMLKNGDKIPDAILVDIEMPKMDGYTFASEVRKYNKFKNLPLIAVTSRVTKTDRMRGVESGMTEYITKPYSGEYLTTVVKRSIKLEGDQS

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ADP_C_3(1I5C)
CHEA_THEMA
[Raw transfer]




ADP_B_6(1I59)

[Raw transfer]




ADP_B_7(1I58)

[Raw transfer]




ACP_B_5(1I5A)

[Raw transfer]




ACP_A_6(1I58)
CHEA_THEMA
[Raw transfer]




ACP_A_6(1I58)
CHEA_THEMA
[Raw transfer]




ANP_A_5(1I59)
CHEA_THEMA
[Raw transfer]




ACP_A_6(1I58)
CHEA_THEMA
[Raw transfer]




ANP_A_5(2CH4)
CHEA_THEMA
[Raw transfer]




ANP_A_5(2CH4)
CHEA_THEMA
[Raw transfer]




ACP_A_6(1I5A)
CHEA_THEMA
[Raw transfer]




ANP_B_6(2CH4)

[Raw transfer]




128_D_4(1I5D)

[Raw transfer]




21 PsiBlast_CBE 77.6445%-101 - C3 -1B3Q - CHEA_THEMA -
1 PsiBlast_PDB 77.3345%-101 - C3 -1B3Q - CHEA_THEMA -
101 HHSearch 76.1047%-102 - C3 -1B3Q - CHEA_THEMA -
123 Fugue 72.2047%-100 - C3 -2CH4 3.5 CHEA_THEMA
2 PsiBlast_PDB 72.0047%-101 - C3 -2CH4 3.5 CHEA_THEMA
22 PsiBlast_CBE 70.6347%-102 - C3 -2CH4 5.3
3 PsiBlast_PDB 64.5747%-108 - C5 -3UR1 - CHEA_THEMA -
124 Fugue 64.3144%-113 * C5 *3UR1 - CHEA_THEMA -
9 PsiBlast_PDB 56.4054% -43 - C3 -1I5C 5.8 CHEA_THEMA
25 PsiBlast_CBE 55.1054% -45 - C3 -1I58 4.2
8 PsiBlast_PDB 53.7454% -42 - C3 -1I5A 5.7 CHEA_THEMA
7 PsiBlast_PDB 53.7054% -47 - C3 -1I59 5.3 CHEA_THEMA
23 PsiBlast_CBE 53.5154% -39 - C3 -1I5A 4.3
24 PsiBlast_CBE 53.1654% -35 - C3 -1I59 4.5
126 Fugue 52.7453% -54 - C3 -1B3Q - CHEA_THEMA -
107 HHSearch 51.9655% -43 - C3 -1I58 5.8 CHEA_THEMA
125 Fugue 51.3153% -43 - C3 -1I58 5.8 CHEA_THEMA
6 PsiBlast_PDB 50.8754% -43 - C3 -1I58 5.8 CHEA_THEMA
19 PsiBlast_PDB 49.9733% -48 - C4 -3TO5 - ? -
5 PsiBlast_PDB 49.4855% -48 - C3 -1I5D 5.2