@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : jhp_1000: (2015-12-20 )
MTLSQALNKAKKELSPKGFRGGLESEILLGFVLQKERVFLHTHEHLELSHEEETRFFELVGKRLNDCPIEYLLGSCDFYGRSFFVNEHVLIPRPETEILVQKALNIISQYHLKEIGEIGIGSGCVSVSLALENPNLSIYASDISPKALEVALKNIERFCLKERVFLKQTRLWDHMPTIEMLVSNPPYIARNYPLEKSVLKEPHEALFGGVKGDEILKEIVFLAAKLKIPFLVCEMGYDQLKSLKECLEFCGYDAEFYKDLSGFDRGFVGVLKSFLR

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

SAH_B_2(1NV9)
PRMC_THEMA
[Raw transfer]




SAM_A_3(1NV8)
PRMC_THEMA
[Raw transfer]




MEQ_B_6(1NV8)
PRMC_THEMA
[Raw transfer]




SAH_B_2(1T43)
PRMC_ECOLI
[Raw transfer]




GLN_C_9(1SG9)
PRMC_THEMA
[Raw transfer]




GLN_A_7(1SG9)
PRMC_THEMA
[Raw transfer]




MEQ_A_5(1NV8)
PRMC_THEMA
[Raw transfer]




GLN_B_8(1SG9)
PRMC_THEMA
[Raw transfer]




41 HHSearch 89.9636% -97 - C1 -1NV8 7.0 PRMC_THEMA
31 Fugue 89.8535% -90 - C1 -1NV9 6.3 PRMC_THEMA
42 HHSearch 88.1829% -87 - C1 -2B3T - PRMC_ECOLI -
23 PsiBlast_CBE 83.6339%-103 - C1 -1NV8 3.8 PRMC_THEMA
22 PsiBlast_CBE 83.5639% -98 - C1 -1SG9 2.4 PRMC_THEMA
5 PsiBlast_PDB 83.5429% -88 - C1 -2B3T - PRMC_ECOLI -
2 PsiBlast_PDB 82.5839%-100 - C1 -1NV9 - PRMC_THEMA -
32 Fugue 82.4528% -90 * C1 *1T43 - PRMC_ECOLI -
4 PsiBlast_PDB 82.0039% -96 - C1 -1VQ1 - PRMC_THEMA -
21 PsiBlast_CBE 81.9839% -95 - C1 -1SG9 2.2 PRMC_THEMA
6 PsiBlast_PDB 81.8629% -94 - C1 -1T43 5.7 PRMC_ECOLI
1 PsiBlast_PDB 81.5239% -98 - C1 -1NV8 2.2 PRMC_THEMA
3 PsiBlast_PDB 81.5039% -98 - C1 -1SG9 2.8 PRMC_THEMA
33 Fugue 65.7118% -80 - C1 -2H00 - MET16_HUMAN -
7 PsiBlast_PDB 61.5732% -93 - C1 -4DZR - ? -
37 Fugue 60.5216% -78 - C1 -3TM4 - ? -
36 Fugue 60.3417% -80 - C1 -3GDH - TGS1_HUMAN -
29 PsiBlast_CBE 57.6732% -83 - C1 -3HTX - HEN1_ARATH -
30 PsiBlast_CBE 55.3432% -69 - C1 -3HTX - HEN1_ARATH -
40 Fugue 51.9717% -61 - C1 -3EGV - PRMA_THET8 -