@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : jhp_1002: (2015-12-20 )
MFQPLLDAFIESTPIKKKITFKSPPPPLKIAVANWWGGAEEFKKSTLYFILSQRYTITLHQNPNEPSDLVLGSPIGSARKILSYQNTKRVFYTGENEVPNFNLFDYAIGFDELDFRDRYLRMPLYYASLHYKAESVNDTTAPYKLKDNSLYALKKPSHHFKENHPNLCAVVNDESDPLKRGFASFVASNPNAPIRNAFYDALNSIEPVTGGGSVKNTLGYNVKNKSEFLSQYKFNLCFENTQGYGYVTEKIIDAYFSHTIPIYWGSPSVAKDFNPKSFVNVCDFKNFDEAIDYVRYLHTHPNAYLDMLYENPLNTLDGKAYFYQNLSFKKILDFFKTILENDTIYHDNPFIFYRDLNEPLVAIDDLRVNYDDLRVNYDDLRVNYDDLRVNYDRLLQNASPLLELSQNTTFKIYRKAYQKSLPLLRAIRRWVKKLGL

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GDP_I_9(2NZX)
?
[Raw transfer]



GDP_H_8(2NZX)
?
[Raw transfer]



GDP_M_13(2NZY)
?
[Raw transfer]



GDP_G_7(2NZX)
?
[Raw transfer]



GDP_L_12(2NZY)
?
[Raw transfer]



GDP_N_14(2NZY)
?
[Raw transfer]



FUC_F_6(2NZY)
?
[Raw transfer]



FUC_E_5(2NZY)
?
[Raw transfer]
3 PsiBlast_PDB 98.9389%-115 - C6 -2NZY 6.6 ?
2 PsiBlast_PDB 98.0489%-113 - C6 -2NZX 7.3 ?
1 PsiBlast_PDB 97.9689%-113 - C6 -2NZW - ? -
15 HHSearch 97.9190%-113 - C6 -2NZW - ? -
13 PsiBlast_CBE 97.7589%-112 - C6 -2NZW - ? -
10 PsiBlast_CBE 97.6589%-110 - C6 -2NZY 6.5 ?
11 PsiBlast_CBE 97.5489%-113 - C6 -2NZX 7.3 ?
12 PsiBlast_CBE 97.3289%-110 - C6 -2NZX 7.2 ?
9 PsiBlast_CBE 97.1089%-109 - C6 -2NZY 6.9 ?
14 PsiBlast_CBE 96.8489%-113 - C6 -2NZW - ? -
36 Fugue 94.8586%-104 - C6 -2NZW - ? -
17 HHSearch 39.709% -47 - C6 -3QHP - ? -
43 Fugue 39.5316% -6 - C3 -4BVA - CRYM_MOUSE -
28 HHSearch 39.2616% -58 - C6 -3RHZ - ? -
45 Fugue 37.7714% -29 - C5 -5A5T - ? -
24 HHSearch 37.219% -47 - C6 -3OY2 - ? -
44 Fugue 37.119% -27 - C2 -2AQJ - PRNA_PSEFL -
26 HHSearch 36.7114% -55 - C6 -2QZS - GLGA_ECOLI -
35 HHSearch 36.3716% -48 - C6 -1RZU - GLGA1_RHIRD -
16 HHSearch 36.2321% -40 - C6 -1JG7 - GSTB_BPT4 -