@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : jhp_1023: (2015-12-20 )
MAHILVSGATSGFGLEIAKAFLQKNHVVFGTGRRQENLQKLQLAYPKRFIPLCFDLQNKPETKRAIETIFSMTDRIDALINNAGLALGLNKAYECELDDWEVMIDTNIKGLLHLTRLILPSMIEHDQGTIINLGSIAGTYAYPGGNVYGASKAFVKQFSLNLRADLAGTNIRVSNVEPGLCGETEFSMVRFKGDKIKAQSVYENTLYLKPQDIANIVLWIYEQPSHVNINRIEIMPTSQTFAPLPTHKNP

Atome Classification :

(25 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAP_A_5(3RKU)
YM71_YEAST
[Raw transfer]



NDP_D_11(2JAP)
?
[Raw transfer]



NAP_B_6(3RKU)
YM71_YEAST
[Raw transfer]



NAP_D_8(3RKU)
YM71_YEAST
[Raw transfer]



NDP_A_5(2JAH)
?
[Raw transfer]



NAP_C_7(3RKU)
YM71_YEAST
[Raw transfer]



NDP_C_9(2JAP)
?
[Raw transfer]



NDP_B_7(2JAP)
?
[Raw transfer]



NDP_A_5(2JAP)
?
[Raw transfer]
23 PsiBlast_CBE 93.5350% -96 - C1 -3ASV - ? -
25 PsiBlast_CBE 93.4950% -93 - C1 -3ASV - ? -
2 PsiBlast_PDB 93.0350% -93 - C1 -3ASV - ? -
22 PsiBlast_CBE 92.8750% -93 - C1 -3ASV - ? -
24 PsiBlast_CBE 92.5550% -92 - C1 -3ASV - ? -
21 PsiBlast_CBE 91.7550% -91 - C1 -3ASV - ? -
1 PsiBlast_PDB 86.1450% -93 - C1 -3ASU - ? -
3 PsiBlast_PDB 86.0348% -93 - C1 -2NWQ - ? -
4 PsiBlast_PDB 79.3534% -88 - C1 -3RKU 13.6 YM71_YEAST
28 PsiBlast_CBE 78.3334% -88 - C1 -3RKU 13.9 YM71_YEAST
26 PsiBlast_CBE 77.2334% -89 - C1 -3RKU 13.7 YM71_YEAST
27 PsiBlast_CBE 76.1934% -86 - C1 -3RKU 13.8 YM71_YEAST
6 PsiBlast_PDB 76.0633% -85 - C1 -1XG5 - DHR11_HUMAN -
31 PsiBlast_CBE 75.8333% -85 - C1 -1XG5 - DHR11_HUMAN -
35 PsiBlast_CBE 75.6932% -99 - C1 -3P19 - ? -
36 PsiBlast_CBE 74.9331% -99 - C1 -3TFO - ? -
37 PsiBlast_CBE 73.6531% -99 - C1 -3TFO - ? -
30 PsiBlast_CBE 73.5733% -82 - C1 -1XG5 - DHR11_HUMAN -
34 PsiBlast_CBE 72.0532% -99 - C1 -3P19 - ? -
29 PsiBlast_CBE 71.3331%-102 - C1 -2EHD - ? -
8 PsiBlast_PDB 64.4031% -79 - C1 -2JAP 13.3 ?
11 PsiBlast_PDB 64.0331% -79 - C1 -2JAH 13.7 ?
38 PsiBlast_CBE 63.9631% -79 - C1 -2JAP 13.6 ?
40 PsiBlast_CBE 63.4931% -79 - C1 -2JAP 13.4 ?
39 PsiBlast_CBE 61.2231% -78 - C1 -2JAP 13.2 ?