@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : jhp_1041: (2015-12-20 )
MPLFDLKSPYPPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIAQTNKPALIMSHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLERLRLSATTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGYSRNEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALERNEIKRLDSVMLYAASQFAVGSERLNLAVKSIEDELALRLKFFKEQDKMLEYNRLKQRTEYDLEMISATGVCKGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRKSVLVEYGFRLPSALDNRPLKFDEFIHKNCQFLFVSATPNKLELELSQKNVAEQIIRPTGLLDPKFEVRDSDKQVQDLFDEIKSVVARGERVLITTLTKKMAEELCKYYAEWGLKVRYMHSEIDAIERNHIIRSLRLKEFDVLIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQTMGRAARNANGKVLLYAKKTTQSMQKAFEITSYRRAKQEEFNKIHNITPKTVTRALEEELKLRDDEIKIAKALKKDKMPKSEREKIIKELDKKMRERAKNLDFEEAMRLRDEIAQLRTL

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

FLQ_C_5(2FDC)
UVRB_BACCA
[Raw transfer]



NACID_C_1(2FDC)
UVRB_BACCA
[Raw transfer]
-
NACID_D_2(2FDC)
UVRB_BACCA
[Raw transfer]
-
NACID_D_1(2D7D)
UVRB_BACSU
[Raw transfer]
-
NACID_D_1(2D7D)
UVRB_BACSU
[Raw transfer]
-
NACID_D_1(2NMV)
?
[Raw transfer]
-
CHAIN_C_3(3V4R)
?
[Raw transfer]
-
CHAIN_D_4(3V4R)
UVRB_BACSU
[Raw transfer]
-
24 HHSearch 92.4153% -92 - C1 -2D7D 8.5 UVRB_BACSU
6 PsiBlast_PDB 92.4153% -92 - C1 -2D7D 8.5 UVRB_BACSU
7 PsiBlast_PDB 91.3953% -93 - C1 -2NMV 7.8 ?
22 PsiBlast_CBE 89.7854% -94 - C1 -1T5L - UVRB_BACCA -
2 PsiBlast_PDB 89.3154% -94 - C1 -1T5L - UVRB_BACCA -
3 PsiBlast_PDB 88.1754% -92 - C1 -3UWX - ? -
21 PsiBlast_CBE 88.1554% -92 - C1 -2FDC 17.4 UVRB_BACCA
51 Fugue 87.8356% -82 - C1 -1D9X - UVRB_BACCA -
8 PsiBlast_PDB 87.6853% -94 - C1 -3V4R 10.6 UVRB_BACSU
50 Fugue 87.1855% -89 - C1 -1D2M - UVRB_THET8 -
23 PsiBlast_CBE 86.6453% -92 - C1 -3V4R 12.9 ?
5 PsiBlast_PDB 86.5854% -83 - C1 -1D9X - UVRB_BACCA -
1 PsiBlast_PDB 84.8354% -89 - C1 -2FDC 11.7 UVRB_BACCA
4 PsiBlast_PDB 84.6254% -81 - C1 -1D9Z - UVRB_BACCA -
57 Fugue 52.1818% -56 - C1 -2EYQ - MFD_ECOLI -
55 Fugue 48.6417% -61 - C1 -3HJH - MFD_ECOLI -
26 HHSearch 48.0817% -66 * C1 *3HJH - MFD_ECOLI -
59 Fugue 47.0116% -61 - C1 -1WP9 - ? -
53 Fugue 46.1253% -54 - C1 -1D9X - UVRB_BACCA -
32 HHSearch 44.4320%-105 - C1 -2V1X - RECQ1_HUMAN -