@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : jhp_1046: (2015-12-20 )
MRRSFLKTIGLGVIALSLGLLNPLSAASYPPIKNTKVGLALSSHPLATEIGQKVLEEGGNAIDAAVAIGFALAVVHPAAGNIGGGGFAVIHLANGENVALDFREKAPLKATKNMFLDKQGNVVPKLSEDGYLAAGVPGTVAGMEAMLKKYGTKKLSQLIDPAIKLAENGYAISQRQAETLKEARERFLKYSSSKKYFFKKGHLDYQEGDLFVQKDLAKTLNQIKTLGAKGFYQGQVADLIEKDMQKNGGIITKEDLASYNVKWRKPVIGSYRGYKIISMSPPSSGGTHLIQILNVMENADLSTLGYGASKNIHIAAEAMRQAYADRSVYMGDADFVSVPVDKLINKAYAKKIFDAIQPDTVTPSSQIKPGMGQLHEGSNTTHYSVADRWGNAVSVTYTINASYGSAASIDGAGFLLNNEMDDFSIKPGNPNLYGLVGGDANAIEANKRPLSSMSPTIVLKNNKVFLVVGSPGGSRIITTVLQVISNVIDYNMNISEAVSAPRFHMQWLPDELRIEKFGMPADVKDNLTKMGYQIVTKPVMGDVNAIQVLPKTKGSVFYGATDPRKEF

Atome Classification :

(23 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GLU_B_5(2QM6)
?
[Raw transfer]



GTB_B_5(2QMC)
?
[Raw transfer]



AVN_D_6(3FNM)
?
[Raw transfer]



GTB_B_5(2QMC)
?
[Raw transfer]



AVN_B_5(3FNM)
?
[Raw transfer]



GLU_D_6(2QM6)
?
[Raw transfer]



GTB_D_6(2QMC)
?
[Raw transfer]



AZS_D_6(2Z8J)
?
[Raw transfer]



GLU_B_5(2DBW)
?
[Raw transfer]



AVN_B_5(2Z8K)
GGT_ECOLI
[Raw transfer]



GLU_B_7(2DBX)
GGT_ECOLI
[Raw transfer]



AVN_D_6(2Z8K)
GGT_ECOLI
[Raw transfer]



GLU_B_7(2DG5)
?
[Raw transfer]



AZS_B_5(2Z8J)
GGT_ECOLI
[Raw transfer]



AZS_B_5(2Z8I)
?
[Raw transfer]



AZS_D_6(2Z8I)
?
[Raw transfer]



GLU_B_5(2QM6)
?
[Raw transfer]



AVN_B_5(3FNM)
?
[Raw transfer]
22 PsiBlast_CBE 90.6598% -84 - C1 -2QMC 2.4 ?
23 PsiBlast_CBE 90.4898% -85 - C1 -2QM6 2.7 ?
21 PsiBlast_CBE 90.2898% -83 - C1 -3FNM 2.8 ?
1 PsiBlast_PDB 90.2298% -87 - C1 -2QM6 2.7 ?
2 PsiBlast_PDB 89.8698% -87 - C1 -2QMC 2.4 ?
3 PsiBlast_PDB 89.6398% -87 - C1 -3FNM 2.8 ?
4 PsiBlast_PDB 89.5997% -84 - C1 -2NQO - ? -
55 HHSearch 88.5597% -89 - C1 -2QMC 2.4 ?
52 HHSearch 86.8830% -67 * C1 *2NLZ - ? -
71 Fugue 77.0426% -51 - C1 -2I3O - ? -
31 PsiBlast_CBE 75.6150% -76 - C1 -2Z8J 2.7 ?
32 PsiBlast_CBE 75.5550% -77 - C1 -2Z8I 2.7 ?
6 PsiBlast_PDB 75.5250% -75 - C1 -2Z8J 2.4 GGT_ECOLI
30 PsiBlast_CBE 75.2850% -78 - C1 -2Z8K 2.8 GGT_ECOLI
7 PsiBlast_PDB 75.2050% -78 - C1 -2Z8K 2.8 GGT_ECOLI
5 PsiBlast_PDB 75.1750% -77 - C1 -2Z8I 2.7 ?
11 PsiBlast_PDB 75.0449% -77 - C1 -2DG5 2.7 ?
10 PsiBlast_PDB 74.9549% -78 - C1 -2DBX 2.7 GGT_ECOLI
12 PsiBlast_PDB 74.6449% -79 - C1 -2E0X - ? -
13 PsiBlast_PDB 74.4349% -77 - C1 -2E0Y - GGT_ECOLI -
9 PsiBlast_PDB 74.3949% -76 - C1 -2DBW 2.7 ?
25 PsiBlast_CBE 60.0099% -66 - C1 -3FNM 4.1 ?
27 PsiBlast_CBE 59.3199% -69 - C1 -2QM6 3.6 ?