@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : jhp_1049: (2015-12-20 )
MNNHTSSFGSFIAKNGFLNEKEVAQKFNDYIHDRDAQIWLMIMGYDLNKIEYVKANVLSGYKADVNVIIQIKMKQTLDSENLQVKLVSNLKGFNQIDKRKLRSYQEMWNIPPNIYQLFAYFTGELKPTRQDIKYPNKRMLAYEFTNKEQQELLAWLNDNKMLIVSDILKGRGEFSAEWVLVIQKINLNMKWALKNINEVMQHYLDDGIVEISKKGSLKIGRITIQRKGGDNGRESANMLQFKIDPTGLLG

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NACID_C_1(2FLC)
?
[Raw transfer]
-
NACID_F_4(2FKC)
?
[Raw transfer]
-
NACID_E_3(2FLC)
?
[Raw transfer]
-
NACID_D_2(2FKC)
?
[Raw transfer]
-
NACID_C_1(2FKC)
?
[Raw transfer]
-
NACID_D_2(2FKC)
?
[Raw transfer]
-
NACID_D_2(2FL3)
?
[Raw transfer]
-
NACID_F_2(2FKH)
?
[Raw transfer]
-
2 PsiBlast_PDB 97.1953% -78 - C1 -2FKC 12.3 ?
17 Fugue 97.1654% -80 - C1 -1YNM - ? -
1 PsiBlast_PDB 97.0653% -80 - C1 -1YNM - ? -
8 HHSearch 96.8253% -76 - C1 -2FKC 11.5 ?
7 PsiBlast_CBE 95.6053% -75 - C1 -2FKC 12.3 ?
4 PsiBlast_PDB 95.3053% -75 - C1 -2FL3 11.3 ?
5 PsiBlast_PDB 95.1353% -77 - C1 -2FLC 10.3 ?
3 PsiBlast_PDB 94.1653% -75 - C1 -2FKH 11.5 ?
20 Fugue 55.5118% -38 * C2 *4UY5 - EGTD_MYCS2 -
9 HHSearch 51.2517% -89 - C1 -1SA3 - T2M1_MORSP -
18 Fugue 43.8716% -40 - C1 -2CVH - RADB_THEKO -
26 Fugue 43.3714% -27 - C2 -4I9F - ? -
12 HHSearch 40.709% -50 - C1 -1VZ0 - SP0J_THET2 -
24 Fugue 39.3613% -29 - C1 -4O8U - ? -
6 PsiBlast_PDB 28.7520% 14 - C1 -1TZ7 - MALQ_AQUAE -
13 HHSearch 27.1922% -55 - C1 -2EKD - ? -
10 HHSearch 19.5330% 228 - C1 -2AHQ - ? -
16 HHSearch 18.9815% 66 - C1 -3KRS - ? -
11 HHSearch 17.8719% 62 - C1 -2J27 - TPIS_TRYBB -
15 HHSearch 15.7819% 68 - C1 -3TH6 - ? -