@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : jhp_1079: (2015-12-20 )
MFQALSDGFKNALNKIRFQDDEKALDRALDELKKTLLKNDVHHKVARELLKKVESQTKAGGIGKQQFLDALEKSLLEILSAKGSSGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTKNKKVLLCACDLQRLAAVEQLKVLGEQVGVEVFHEENKSVKEIANNALKRAKEAQFDVLIVDSAGRLAIDKELMQELKEVKEVLNPHEVLYVADALSGQDGVKSANTFNEEIGVSGVVLSKFDSDSKGGIALGITYQLGLPLRFIGSGEKIPDLDVFMPERIVGRLMGAGDIISLAEKTASVLNPNEAKDLSKKLKKGQFTFNDFLNQIEKVKKLGSMSSLISMIPGLGNMASALKDTDLESSLEVKKIKAMVNSMTKKERENPEILNGSRRKRIALGSGLEVSEINRIIKRFDQASKMAKRLTNKKGISDLMNLMSQAKNQTPPKMR

Atome Classification :

(47 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GDP_B_17(3DM5)
SRP54_PYRFU
[Raw transfer]



GDP_B_17(3DM5)
SRP54_PYRFU
[Raw transfer]



GCP_B_6(1RJ9)
SRP54_THEAQ
[Raw transfer]



GDP_B_17(3DM5)
SRP54_PYRFU
[Raw transfer]



GDP_A_6(1O87)
SRP54_THEAQ
[Raw transfer]



GDP_B_11(4C7O)
FTSY_ECOLI
[Raw transfer]



GNP_A_12(2J7P)
SRP54_THEAQ
[Raw transfer]



GNP_B_20(2J7P)
SRP54_THEAQ
[Raw transfer]



GNP_B_5(1JPN)
SRP54_THEAQ
[Raw transfer]



GDP_D_17(4C7O)
FTSY_ECOLI
[Raw transfer]



GNP_B_2(1JPJ)
SRP54_THEAQ
[Raw transfer]



GNP_A_6(1JPN)
SRP54_THEAQ
[Raw transfer]



CIT_B_4(1VMA)
?
[Raw transfer]



GDP_B_12(1O87)
SRP54_THEAQ
[Raw transfer]



GDP_B_2(2NG1)
SRP54_THEAQ
[Raw transfer]



GDP_A_7(1NG1)
SRP54_THEAQ
[Raw transfer]



GDP_C_2(3E70)
?
[Raw transfer]



GDP_C_2(3E70)
?
[Raw transfer]



GCP_A_5(1RJ9)
SRP54_THEAQ
[Raw transfer]



GCP_D_17(1OKK)
FTSY_THEAQ
[Raw transfer]



GDP_B_11(4C7O)
SRP54_ECOLI
[Raw transfer]



GCP_D_17(1OKK)
SRP54_THEAQ
[Raw transfer]



GDP_D_17(4C7O)
SRP54_ECOLI
[Raw transfer]



GOL_B_14(3DMD)
?
[Raw transfer]



GNP_K_11(2Q9C)
FTSY_THEAQ
[Raw transfer]



FMT_B_11(1O87)
SRP54_THEAQ
[Raw transfer]



GNP_T_20(2Q9B)
FTSY_THEAQ
[Raw transfer]



EDO_B_13(3NG1)
SRP54_THEAQ
[Raw transfer]



GDP_D_2(2IYL)
FTSY_THEAQ
[Raw transfer]



GCP_B_6(1RJ9)
FTSY_THEAQ
[Raw transfer]



EDO_A_6(2J7P)
SRP54_THEAQ
[Raw transfer]



ACY_B_7(1JPN)
SRP54_THEAQ
[Raw transfer]



GDP_D_18(4C7O)
SRP54_ECOLI
[Raw transfer]



EDO_B_14(3NG1)
SRP54_THEAQ
[Raw transfer]



GCP_B_6(1RJ9)
FTSY_THEAQ
[Raw transfer]



EDO_A_12(3NG1)
SRP54_THEAQ
[Raw transfer]



EDO_A_2(2YHS)
FTSY_ECOLI
[Raw transfer]



EDO_A_2(2YHS)
FTSY_ECOLI
[Raw transfer]



ACY_A_9(1JPN)
SRP54_THEAQ
[Raw transfer]



GNP_B_20(2J7P)
FTSY_THEAQ
[Raw transfer]



GNP_A_12(2J7P)
FTSY_THEAQ
[Raw transfer]
21 PsiBlast_CBE 92.2941% -89 - C5 -2XXA - SRP54_ECOLI -
1 PsiBlast_PDB 90.8041% -86 - C5 -2XXA - SRP54_ECOLI -
106 HHSearch 89.6333% -81 - C5 -3DM5 Error SRP54_PYRFU
105 HHSearch 88.8040% -85 - C5 -2FFH - SRP54_THEAQ -
6 PsiBlast_PDB 88.2034% -78 - C5 -3DM5 Error SRP54_PYRFU
2 PsiBlast_PDB 86.9140% -75 - C5 -2FFH - SRP54_THEAQ -
23 PsiBlast_CBE 86.6140% -74 - C5 -2FFH - SRP54_THEAQ -
103 HHSearch 86.4141% -26 - C- -2XXA - SRP54_ECOLI -
24 PsiBlast_CBE 86.2534% -79 - C5 -3DM5 7.1 SRP54_PYRFU
22 PsiBlast_CBE 85.7340% -72 - C5 -2FFH - SRP54_THEAQ -
5 PsiBlast_PDB 84.6634% -78 - C5 -3NDB - SRP54_METJA -
25 PsiBlast_CBE 82.5240% -92 - C5 -4C7O 4.0 SRP54_ECOLI
4 PsiBlast_PDB 82.3234% -67 - C5 -2V3C - SRP54_METJA -
9 PsiBlast_PDB 81.6940% -96 - C5 -4C7O 3.0 SRP54_ECOLI
15 PsiBlast_PDB 81.1431% -64 - C5 -2J37 - SRP54_CANFA -
8 PsiBlast_PDB 80.5436% -74 - C5 -1QZX - SRP54_SULSO -
26 PsiBlast_CBE 78.8140% -86 - C5 -2J46 - SRP54_THEAQ -
29 PsiBlast_CBE 78.7840% -81 - C5 -1O87 7.0 SRP54_THEAQ
108 HHSearch 78.7634% -44 - C- -2V3C - SRP54_METJA -
32 PsiBlast_CBE 78.4140% -87 - C5 -3NG1 3.7 SRP54_THEAQ
30 PsiBlast_CBE 78.3940% -84 - C5 -1JPN 6.5 SRP54_THEAQ
12 PsiBlast_PDB 78.2940% -81 - C5 -1JPJ 7.5 SRP54_THEAQ
17 PsiBlast_PDB 78.1640% -87 - C5 -3NG1 3.7 SRP54_THEAQ
36 PsiBlast_CBE 77.9340% -85 - C5 -1NG1 7.4 SRP54_THEAQ
18 PsiBlast_PDB 77.7640% -80 - C5 -1OKK 2.9 SRP54_THEAQ
13 PsiBlast_PDB 77.7240% -85 - C5 -1JPN 7.3 SRP54_THEAQ
11 PsiBlast_PDB 77.2940% -85 - C5 -1O87 7.2 SRP54_THEAQ
20 PsiBlast_PDB 77.0940% -77 - C5 -2J7P 9.2 SRP54_THEAQ
33 PsiBlast_CBE 76.7640% -80 - C5 -2J7P 9.5 SRP54_THEAQ
114 HHSearch 76.6935% -91 - C5 -3E70 6.9 ?
39 PsiBlast_CBE 76.1439% -82 - C5 -2NG1 6.2 SRP54_THEAQ
10 PsiBlast_PDB 74.6440% -80 - C5 -1RJ9 9.3 SRP54_THEAQ
123 HHSearch 74.5734% -94 - C5 -1RJ9 3.4 FTSY_THEAQ
42 PsiBlast_CBE 73.9134% -91 - C5 -3E70 6.9 ?
44 PsiBlast_CBE 73.1334% -93 - C5 -3DMD 3.7 ?
118 HHSearch 72.6834% -95 - C5 -2YHS 2.5 FTSY_ECOLI
46 PsiBlast_CBE 70.8841%-101 - C5 -1VMA 3.9 ?
52 PsiBlast_CBE 67.8637%-103 - C5 -2YHS 2.5 FTSY_ECOLI
50 PsiBlast_CBE 67.5938% -94 - C5 -4C7O 7.3 FTSY_ECOLI
51 PsiBlast_CBE 67.3438% -87 - C5 -4C7O 6.9 FTSY_ECOLI
62 PsiBlast_CBE 64.5438% -88 - C5 -2J7P 2.9 FTSY_THEAQ
63 PsiBlast_CBE 64.2338% -89 - C5 -2J7P 2.9 FTSY_THEAQ
60 PsiBlast_CBE 63.6938% -89 - C5 -1OKK 7.2 FTSY_THEAQ
64 PsiBlast_CBE 63.6738%-104 - C5 -2IYL 5.1 FTSY_THEAQ
61 PsiBlast_CBE 61.6038% -88 - C5 -1RJ9 2.9 FTSY_THEAQ
57 PsiBlast_CBE 60.0638% -91 - C5 -2Q9B 4.3 FTSY_THEAQ
55 PsiBlast_CBE 59.8338% -88 - C5 -2Q9C 5.0 FTSY_THEAQ