@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : jhp_1118: (2015-12-21 )
MARKTPLNRIRNIGIAAHIDAGKTTTSERILFYTGVSHKIGEVHDGAATMDWMEQEKERGITITSAATTCFWKDHQINLIDTPGHVDFTIEVERSMRVLDGAVSVFCSVGGVQPQSETVWRQANKYGVPRIVFVNKMDRIGANFYNVENQIKQRLKANPVPINIPIGAEDTFIGVIDLVQMKAIVWNNETMGAKYDVEEIPSDLLEKAKQYREKLVEAVAEQDEALMEKYLGGEELDIEEIKKGIKTGCLNMSFVPMLCGSSFKNKGVQTLLDAVIDYLPAPTEVVDIKGIDPKTEEEVFVKSSDDGEFAGLAFKIMTDPFVGQLTFVRVYRGKLESGSYVYNSTKDKKERVGRLLKMHSNKREDIKEVYAGEICAFVGLKDTLTGDTLCDEKNAVVLERMEFPEPVIHIAVEPKTKADQEKMGVALGKLAEEDPSFRVMTQEETGQTLIGGMGELHLEIIVDRLKREFKVEAEIGQPQVAFRETIRSSVSKEHKYAKQSGGRGQYGHVFIKLEPKEPGSGYEFVNEISGGVIPKEYIPAVDKGIQEAMQNGVLAGYPVVDFKVTLYDGSYHDVDSSEMAFKIAGSMAFKEASRAANPVLLEPMMKVEVEVPEEYMGDVIGDLNRRRGQINSMDDRLGLKIVNAFVPLVEMFGYSTDLRSATQGRGTYSMEFDHYGEVPSNIAKEIVEKRKG

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GDP_A_2(2BM1)
EFG_THETH
[Raw transfer]



GDP_A_3(1FNM)
EFG_THETH
[Raw transfer]



GDP_C_3(2EFG)
EFG_THET8
[Raw transfer]



GDP_A_2(2BM0)
?
[Raw transfer]



GCP_A_2(2J7K)
EFG_THETH
[Raw transfer]



GDP_A_3(4M1K)
?
[Raw transfer]



GDP_A_3(4M1K)
?
[Raw transfer]



GDP_A_3(4MYT)
EFG_THETH
[Raw transfer]



GDP_A_3(4MYU)
EFG_THETH
[Raw transfer]
78 HHSearch 95.3063% -83 - C1 -2XEX - EFG_STAAU -
2 PsiBlast_PDB 94.6862% -83 - C1 -2XEX - EFG_STAAU -
21 PsiBlast_CBE 92.7062% -83 - C1 -2XEX - EFG_STAAU -
14 PsiBlast_PDB 92.5164% -87 - C1 -2BM0 6.5 ?
10 PsiBlast_PDB 92.0664% -80 - C1 -1FNM 7.4 EFG_THETH
7 PsiBlast_PDB 91.4364% -80 - C1 -2J7K 7.2 EFG_THETH
9 PsiBlast_PDB 91.0964% -80 - C1 -4MYU 6.0 EFG_THETH
67 Fugue 90.9763% -82 - C1 -4M1K 6.3 ?
8 PsiBlast_PDB 90.8764% -83 - C1 -4M1K 6.3 ?
3 PsiBlast_PDB 90.8264% -79 - C1 -2OM7 - ? -
12 PsiBlast_PDB 89.9764% -82 * C1 *2BM1 6.7 EFG_THETH
6 PsiBlast_PDB 88.9164% -77 - C1 -4MYT 5.6 EFG_THETH
4 PsiBlast_PDB 88.8864% -76 - C1 -2EFG 7.2 EFG_THET8
69 Fugue 86.0262% -76 - C1 -1ELO - ? -
1 PsiBlast_PDB 85.7566% -65 - C1 -3J0E - EFG_ECOLI -
13 PsiBlast_PDB 85.6964% -70 - C1 -3IZP - ? -
81 HHSearch 78.0737% -72 - C1 -2DY1 - ? -
17 PsiBlast_PDB 74.8236% -72 - C1 -2DY1 - ? -
16 PsiBlast_PDB 74.2536% -69 - C1 -1WDT - ? -
84 HHSearch 62.4128% -64 - C1 -3CB4 - LEPA_ECOLI -