@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : jhp_1128: (2015-12-21 )
MAKEKFNRTNPHVNIGTIGHVYHGKTTLSAAISAVLSLKGLAEMKDYDNIDNAPQEKERGITIATSHIEYETETRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLSRQVGVPHIVVFLNKQDMVDDQELLELVEMEVRELLSAYEFPGDDTPIVAGSALRALEEAKAGNVGEWGEKVLKLMAEVDSYIPTPERDTEKTFLMPVEDVFSIAGRGTVVTGRIERGVVKVGDEVEIVGIRATQKTTVTGVEMFRKELEKGEAGDNVGVLLRGTKKEEVERGMVLCKPGSITPHKKFEEEIYVLSKEEGGRHTPFFTNYRPQFYVRTTDVTGSITLPEGVEMVMPGDNVKITVELISPVALELGTKFAIREGGRTVGAGVVSNIIE

Atome Classification :

(45 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GNP_A_3(1EXM)
EFTU1_THETH
[Raw transfer]



GDP_A_5(1EFC)
EFTU1_ECOLI
[Raw transfer]



GDP_B_6(1EFC)
EFTU1_ECOLI
[Raw transfer]



GNP_A_2(4LBW)
EFTU1_THETH
[Raw transfer]



GNP_A_2(4H9G)
EFTU1_THETH
[Raw transfer]



GNP_A_2(2C78)
EFTU1_THET8
[Raw transfer]



GDP_A_6(1D8T)
EFTU1_ECOLI
[Raw transfer]



GNP_A_2(2C78)
EFTU1_THET8
[Raw transfer]



GDP_A_3(1HA3)
EFTU1_THET8
[Raw transfer]



GDP_H_6(1DG1)
EFTU2_ECOLI
[Raw transfer]



GNP_A_3(2C77)
EFTU2_THET8
[Raw transfer]



GNP_A_2(4LBZ)
EFTU1_THETH
[Raw transfer]



GNP_A_2(4LBV)
EFTU1_THETH
[Raw transfer]



GNP_A_2(4LBY)
EFTU1_THETH
[Raw transfer]



GDP_G_5(1DG1)
EFTU2_ECOLI
[Raw transfer]



GDP_B_(1D8T)
EFTU1_ECOLI
[Raw transfer]



GNP_P_9(1B23)
EFTU_THEAQ
[Raw transfer]



GNP_A_2(4LC0)
EFTU1_THETH
[Raw transfer]



GNP_A_3(2BVN)
EFTU2_ECOLI
[Raw transfer]



GNP_B_6(2BVN)
EFTU2_ECOLI
[Raw transfer]



GDP_A_3(3U2Q)
?
[Raw transfer]



GDP_B_7(1HA3)
EFTU1_THET8
[Raw transfer]



GNP_A_3(1EFT)
EFTU_THEAQ
[Raw transfer]



GDP_B_8(1TUI)
EFTU_THEAQ
[Raw transfer]



GDP_K_10(4IW3)
EFTU1_PSEPK
[Raw transfer]



GDP_C_9(1TUI)
EFTU_THEAQ
[Raw transfer]



GDP_A_5(3U6K)
EFTU1_ECOLI
[Raw transfer]



GDP_A_7(1TUI)
EFTU_THEAQ
[Raw transfer]



GDP_A_4(4G5G)
EFTU1_ECOLI
[Raw transfer]



GNP_A_5(1OB2)
EFTU2_ECOLI
[Raw transfer]



GDP_A_3(2FX3)
EFTU1_ECOLI
[Raw transfer]



GDP_B_7(3U6K)
?
[Raw transfer]



GDP_A_3(1ETU)
EFTU1_ECOLI
[Raw transfer]



GNP_A_4(1KK1)
IF2G_PYRAB
[Raw transfer]



GDP_B_7(4IW3)
EFTU1_PSEPK
[Raw transfer]



GNP_A_4(1KK1)
IF2G_PYRAB
[Raw transfer]



GNP_A_3(4PC7)
EFTU1_ECOLI
[Raw transfer]



GNP_C_3(2P8W)

[Raw transfer]
17 PsiBlast_PDB 96.4771% -95 - C3 -1EXM 10.1 EFTU1_THETH
43 PsiBlast_CBE 96.3873%-110 - C3 -4Q7J - EFTU1_ECOLI -
27 PsiBlast_CBE 96.3373% -97 - C3 -3U6K 5.8 ?
10 PsiBlast_PDB 96.2273% -98 - C3 -1DG1 8.3 EFTU2_ECOLI
30 PsiBlast_CBE 96.1873%-107 - C3 -4PC3 - EFTU1_ECOLI -
11 PsiBlast_PDB 96.1273%-109 - C3 -4PC6 - ? -
7 PsiBlast_PDB 96.1273% -98 - C3 -3U6K 7.5 EFTU1_ECOLI
14 PsiBlast_PDB 95.8671% -94 - C3 -4H9G 9.8 EFTU1_THETH
29 PsiBlast_CBE 95.8373%-106 - C3 -4PC6 - ? -
46 PsiBlast_CBE 95.7873% -98 - C3 -1D8T 8.9 EFTU1_ECOLI
31 PsiBlast_CBE 95.7673%-105 - C3 -4PC2 - ? -
47 PsiBlast_CBE 95.7473% -95 - C3 -1D8T 8.8 EFTU1_ECOLI
40 PsiBlast_CBE 95.6671% -95 - C3 -4LBW 9.8 EFTU1_THETH
20 PsiBlast_PDB 95.6373% -96 - C3 -1EFC 9.0 EFTU1_ECOLI
32 PsiBlast_CBE 95.6173%-111 - C3 -4PC1 - ? -
105 HHSearch 95.5974%-111 - C3 -3AVX - EFTU2_ECOLI (first) -
9 PsiBlast_PDB 95.5873% -94 - C3 -4G5G 8.6 EFTU1_ECOLI
28 PsiBlast_CBE 95.5173% -96 - C3 -1DG1 7.3 EFTU2_ECOLI
38 PsiBlast_CBE 95.4871% -91 - C3 -4LBZ 9.7 EFTU1_THETH
6 PsiBlast_PDB 95.3771% -95 - C3 -1EFT 9.3 EFTU_THEAQ
37 PsiBlast_CBE 95.3471% -93 - C3 -4LC0 9.6 EFTU1_THETH
39 PsiBlast_CBE 95.1771% -94 - C3 -4LBY 9.5 EFTU1_THETH
102 HHSearch 95.0973% -96 - C3 -2C78 9.7 EFTU1_THET8
8 PsiBlast_PDB 95.0273% -96 - C3 -3U2Q 7.4 ?
41 PsiBlast_CBE 94.9171% -94 - C3 -4LBV 9.7 EFTU1_THETH
36 PsiBlast_CBE 94.8773% -94 - C3 -1EFC 8.6 EFTU1_ECOLI
13 PsiBlast_PDB 94.8771% -96 - C3 -2C78 9.7 EFTU1_THET8
35 PsiBlast_CBE 94.5673% -98 - C3 -2BVN 8.8 EFTU2_ECOLI
44 PsiBlast_CBE 94.5173% -94 - C3 -2FX3 7.4 EFTU1_ECOLI
3 PsiBlast_PDB 94.4671% -92 - C3 -1B23 8.8 EFTU_THEAQ
16 PsiBlast_PDB 94.2271% -96 - C3 -2C77 9.8 EFTU2_THET8
21 PsiBlast_CBE 94.1571% -97 - C3 -1TUI 6.0 EFTU_THEAQ
15 PsiBlast_PDB 94.1373% -94 - C3 -1OB2 7.0 EFTU2_ECOLI
34 PsiBlast_CBE 94.0973% -98 - C3 -2BVN 9.3 EFTU2_ECOLI
33 PsiBlast_CBE 93.7471%-105 - C3 -1HA3 8.4 EFTU1_THET8
22 PsiBlast_CBE 93.4971% -94 - C3 -1TUI 6.7 EFTU_THEAQ
2 PsiBlast_PDB 93.4271% -96 - C3 -1TUI 6.6 EFTU_THEAQ
18 PsiBlast_PDB 93.3671% -98 - C3 -1HA3 9.2 EFTU1_THET8
52 PsiBlast_CBE 93.2171% -93 - C3 -4IW3 6.5 EFTU1_PSEPK
51 PsiBlast_CBE 93.0471% -97 - C3 -4IW3 5.7 EFTU1_PSEPK
12 PsiBlast_PDB 91.5173%-103 - C3 -4PC7 7.7 EFTU1_ECOLI
130 Fugue 72.9331% -76 - C3 -1KK1 8.1 IF2G_PYRAB
114 HHSearch 72.3532% -69 - C3 -1KK1 8.1 IF2G_PYRAB
45 PsiBlast_CBE 65.8473%-117 - C3 -1ETU 4.4 EFTU1_ECOLI
135 Fugue 5.7948% 168 - C3 -2P8W 3.1