@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : jhp_1133: (2015-12-21 )
MLDLSYSLERVLQEDPAARNKWEVLLLYPGIHALLCYRLAHALHKRRFYFIARALSQLARFITGIEIHPGAKIGRGLFIDHGMGVVIGETTEIGDDVTIYHGVTLGGTGKFKGKRHPTLGNRVVVGAGAKVLGAICVGDDVRIGANAVVLSDLPTGSTAVGAKAKTITKDR

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

CYS_A_6(4H7O)
?
[Raw transfer]




CYS_B_4(1T3D)
CYSE_ECOLI
[Raw transfer]




CYS_A_4(4H7O)
?
[Raw transfer]




CYS_B_8(4H7O)
?
[Raw transfer]




SER_B_5(4N69)
?
[Raw transfer]




COA_I_9(1SST)
CYSE_HAEIN
[Raw transfer]




COA_G_7(1SST)
CYSE_HAEIN
[Raw transfer]




SER_A_2(3Q1X)
?
[Raw transfer]




CYS_A_2(3P47)
?
[Raw transfer]




SER_A_2(3Q1X)
?
[Raw transfer]




COA_K_11(1SST)
CYSE_HAEIN
[Raw transfer]




COA_G_7(1SST)
CYSE_HAEIN
[Raw transfer]




COA_I_9(1SST)
CYSE_HAEIN
[Raw transfer]




CYS_A_6(4H7O)
?
[Raw transfer]




CYS_A_5(1SSQ)
CYSE_HAEIN
[Raw transfer]




CYS_A_5(1SSQ)
CYSE_HAEIN
[Raw transfer]




CYS_B_8(4H7O)
?
[Raw transfer]




CYS_A_5(1SSQ)
CYSE_HAEIN
[Raw transfer]




CYS_A_5(1SSQ)
CYSE_HAEIN
[Raw transfer]




27 PsiBlast_CBE 92.2843%-137 - C2 -4HZD - ? -
8 PsiBlast_PDB 92.2043%-134 - C2 -4HZC - ? -
115 HHSearch 92.1742%-126 * C2 *1SSQ 3.7 CYSE_HAEIN
34 PsiBlast_CBE 91.6743%-133 - C2 -4HZC - ? -
7 PsiBlast_PDB 90.9443%-136 - C2 -4HZD - ? -
116 HHSearch 90.7841%-141 - C2 -3Q1X 2.5 ?
1 PsiBlast_PDB 90.4544%-134 - C2 -1SSQ 3.7 CYSE_HAEIN
22 PsiBlast_CBE 90.3244%-144 - C2 -1SST 4.9 CYSE_HAEIN
21 PsiBlast_CBE 90.3244%-135 - C2 -1SSQ 3.6 CYSE_HAEIN
105 Fugue 90.1941%-127 - C2 -1SSQ 3.7 CYSE_HAEIN
2 PsiBlast_PDB 89.6144%-148 - C2 -1SST 5.0 CYSE_HAEIN
50 PsiBlast_CBE 88.1241%-135 - C2 -4H7O 2.7 ?
11 PsiBlast_PDB 87.3541%-131 - C2 -4H7O 3.7 ?
13 PsiBlast_PDB 87.1044%-152 - C2 -3P1B - ? -
51 PsiBlast_CBE 86.9941%-129 - C2 -4H7O 3.6 ?
23 PsiBlast_CBE 86.6044%-143 - C2 -1SST 4.3 CYSE_HAEIN
12 PsiBlast_PDB 86.2144%-153 - C2 -3P47 2.8 ?
10 PsiBlast_PDB 86.1144%-139 - C2 -1T3D 3.5 CYSE_ECOLI
14 PsiBlast_PDB 84.8244%-154 - C2 -3Q1X 2.4 ?
6 PsiBlast_PDB 84.2944%-137 - C2 -4N6A - ? -
26 PsiBlast_CBE 83.9144%-136 - C2 -4N69 3.5 ?