@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : jhp_1162: (2015-12-21 )
MDIRNEFLQFFQNKGHEIYPSMPLVPNDATLLFTNAGMVQFKDIFTGIVPRPSIPRAASSQLCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKDLYISVHEKDDEAVKLWEKFVPVDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGEKHFKGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKLNNFDSSLFAPLMEEISELTGLDYASEFQPSFRVVADHARAVAFLLAQEVHFNKEGRGYVLRRILRRALRHGYLMGLKEAFLYKVVGVVCEQFSNVHAYLKESKEMVMKECFEEEERFLETLESGMELFNLSLTHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHGACVDMQGFENCMQEQVKRSKASWKGKQNNADFSAILNAYAPNEFVGYETTECLANALGFFDSDFKEITEANPNQEVWVLLEKTPFYAEGGGAIGDRGTLFKDNEEAALVLDTKNFFGLNFSLLEIKKALKKGDQVIAQVSDERLEIAKHHSATHLLQSALREVLGSHVSQAGSLVESKRLRFDFSHAKALNDEELEKVEDLVNAQIFKHLTSQVEHMPLNQAKDKGALALFSEKYAENVRVVSFKEASIELCGGIHVENTGLIGGFRIVKESGVSSGVRRIEAVCGKAFYQLTKEENKELKNAKTLLKNNDVIAGINKLKESVKNSQKAPVSMDLPVEKIHGVNLVVGVVEQGDIKEMIDRLKSKHEKLLAIVFKKENERITLACGVKNVPIKANAWANEVAQILGGKGGGRDDFASAGGKDIENLQAALNLAKNTALKALEG

Atome Classification :

(25 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

A5A_A_2(3HXU)
SYA_ECOLI
[Raw transfer]




5AL_A_2(3HXY)
SYA_ECOLI
[Raw transfer]




SSA_A_2(3HXW)
SYA_ECOLI
[Raw transfer]




SSA_A_3(3HY1)
SYA_ECOLI
[Raw transfer]




G5A_A_4(3HXV)
SYA_ECOLI
[Raw transfer]




G5A_A_3(3HY0)
SYA_ECOLI
[Raw transfer]




G5A_A_3(3HY0)
SYA_ECOLI
[Raw transfer]




G5A_B_7(3HY0)
SYA_ECOLI
[Raw transfer]




ACP_A_2(3HXX)
SYA_ECOLI
[Raw transfer]




ATP_B_10(1YFR)
SYA_AQUAE
[Raw transfer]




ATP_A_9(1YFR)
SYA_AQUAE
[Raw transfer]




ALA_D_4(1YFS)
SYA_AQUAE
[Raw transfer]




GLY_B_2(1YFT)
SYA_AQUAE
[Raw transfer]




ALA_C_3(1YFS)
SYA_AQUAE
[Raw transfer]




ALA_C_3(1YFS)
SYA_AQUAE
[Raw transfer]




SER_B_2(1YGB)
SYA_AQUAE
[Raw transfer]




36 HHSearch 90.3126% -75 * C3 *3WQY - SYA_ARCFU -
40 HHSearch 89.5552% -90 - C3 -3HY0 5.7 SYA_ECOLI
1 PsiBlast_PDB 89.4452% -87 - C3 -3HXU 8.9 SYA_ECOLI
6 PsiBlast_PDB 89.3852% -86 - C3 -3HXZ - SYA_ECOLI -
7 PsiBlast_PDB 89.1652% -87 - C3 -3HY0 5.7 SYA_ECOLI
3 PsiBlast_PDB 89.1652% -86 - C3 -3HXW 8.7 SYA_ECOLI
2 PsiBlast_PDB 89.0852% -86 - C3 -3HXV 5.8 SYA_ECOLI
23 PsiBlast_CBE 89.0452% -87 - C3 -3HXZ - SYA_ECOLI -
24 PsiBlast_CBE 88.9952% -87 - C3 -3HXZ - SYA_ECOLI -
21 PsiBlast_CBE 88.9652% -93 - C3 -3HY1 - SYA_ECOLI -
25 PsiBlast_CBE 88.9552% -86 - C3 -3HXZ - SYA_ECOLI -
8 PsiBlast_PDB 88.6952% -83 - C3 -3HY1 7.6 SYA_ECOLI
22 PsiBlast_CBE 88.6852% -87 - C3 -3HY0 5.8 SYA_ECOLI
4 PsiBlast_PDB 88.3852% -88 - C3 -3HXX 10.1 SYA_ECOLI
5 PsiBlast_PDB 88.2852% -90 - C3 -3HXY 8.9 SYA_ECOLI
16 PsiBlast_PDB 87.3924% -67 - C3 -3WQY - SYA_ARCFU -
9 PsiBlast_PDB 87.1048% -98 - C3 -3HTZ - SYA_AQUAE -
17 PsiBlast_PDB 87.0824% -72 - C3 -3WQZ - SYA_ARCFU -
12 PsiBlast_PDB 86.6048% -94 - C3 -1YFT 3.1 SYA_AQUAE
39 HHSearch 86.5148% -93 - C3 -1YFS 2.6 SYA_AQUAE
13 PsiBlast_PDB 86.3948% -96 - C3 -1YGB 3.5 SYA_AQUAE
11 PsiBlast_PDB 86.3748% -95 - C3 -1YFS 2.6 SYA_AQUAE
10 PsiBlast_PDB 86.2148% -95 - C3 -1YFR 2.8 SYA_AQUAE
26 PsiBlast_CBE 86.1648% -94 - C3 -1YFS 2.5 SYA_AQUAE
27 PsiBlast_CBE 86.0248% -91 - C3 -1YFR 5.3 SYA_AQUAE